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The map label for this gene is ygcN [C]

Identifier: 148660330

GI number: 148660330

Start: 652839

End: 654065

Strand: Reverse

Name: ygcN [C]

Synonym: MRA_0568

Alternate gene names: 148660330

Gene position: 654065-652839 (Counterclockwise)

Preceding gene: 148660333

Following gene: 148660329

Centisome position: 14.8

GC content: 68.79

Gene sequence:

>1227_bases
GTGAGCGTGGATGACAGTGCCGACGTGGTGGTCGTGGGCGCCGGACCGGCCGGGTCAGCTGCGGCCGCCTGGGCTGCCCG
CGCGGGCCGCGACGTCCTCGTCATCGACACCGCCACCTTCCCCCGCGACAAGCCTTGCGGCGACGGGCTGACACCACGCG
CGGTCGCCGAACTGCACCAGCTGGGACTAGGTAAGTGGCTGGCGGACCACATCCGGCATCGTGGGTTGCGGATGAGCGGC
TTCGGAGGCGAGGTGGAAGTGGACTGGCCCGGTCCGAGCTTCCCGTCGTACGGCAGCGCGGTGGCCCGTCTCGAGCTGGA
CGACCGGATCCGAAAGGTCGCCGAGGACACCGGTGCGCGCATGCTACTTGGCGCTAAAGCCGTTGCTGTTCACCATGATT
CATCGAGGCGGGTGGTATCGCTGACCCTGGCCGACGGCACTGAGGTGGGCTGCCGCCAGCTGATCGTTGCCGACGGGGCC
CGATCCCCGCTGGGACGCAAGCTGGGCCGGCGATGGCATCGGGAGACGGTCTATGGCGTCGCGGTCCGGGGGTACCTGAG
CACGGCGTACAGCGATGACCCGTGGCTGACGTCGCATCTGGAACTGCGCTCCCCCGACGGCGCCGTGCTACCCGGCTACG
GCTGGATCTTTCCGCTGGGCAACGGCGAAGTGAACATCGGCGTGGGAGCGTTGTCGACCTCAAGACGGCCAGCCGATCTG
GCCCTGCGCCCGCTGATCTCCTACTACACCGACCTGCGCCGTGACGAGTGGGGCTTCACCGGCCAGCCGCGCGCGGTGTC
GTCGGCGCTGTTGCCGATGGGCGGCGCGGTTTCTGGAGTGGCCGGGTCCAACTGGATGCTCATCGGCGACGCCGCGGCCT
GCGTCAACCCGCTCAATGGCGAGGGCATCGACTACGGGCTGGAAACCGGGCGGCTGGCCGCCGAACTGCTGGATTCGCGT
GACCTGGCACGGCTGTGGCCGTCGCTGCTGGCCGACCGCTACGGTCGCGGCTTCTCGGTTGCGCGCCGGCTAGCGTTGTT
ACTGACCTTCCCACGGTTCCTACCCACGACTGGGCCCATCACGATGCGCTCCACCGCATTGATGAACATCGCCGTGCGGG
TGATGTCCAATCTGGTCACCGACGACGACCGCGACTGGGTGGCGCGGGTGTGGCGCGGTGGCGGTCAATTGTCCCGGCTC
GTCGATCGACGACCGCCGTTCAGCTGA

Upstream 100 bases:

>100_bases
CTCGCGCGACACCAGCACGCACGGCCGCGGCAAAGACAGCGTCGCCCAGGTCAACGCCTGCCACCACCGTCGCCGGAGTC
CTCACTCGACCAACATACTG

Downstream 100 bases:

>100_bases
CGGCCGGCAACCAAGGGTGCGCGAATGTCAACTGTGTTGACATATATCAGGGCCGTTGATATATATGAACACATGACTGA
ATCGCTGGATCTTGAGTTCG

Product: putative oxidoreductase

Products: NA

Alternate protein names: DGGGPL reductase 1; 2,3-di-O-geranylgeranylglyceryl phosphate reductase 1; Geranylgeranyl reductase 1; GGR 1 [H]

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MSVDDSADVVVVGAGPAGSAAAAWAARAGRDVLVIDTATFPRDKPCGDGLTPRAVAELHQLGLGKWLADHIRHRGLRMSG
FGGEVEVDWPGPSFPSYGSAVARLELDDRIRKVAEDTGARMLLGAKAVAVHHDSSRRVVSLTLADGTEVGCRQLIVADGA
RSPLGRKLGRRWHRETVYGVAVRGYLSTAYSDDPWLTSHLELRSPDGAVLPGYGWIFPLGNGEVNIGVGALSTSRRPADL
ALRPLISYYTDLRRDEWGFTGQPRAVSSALLPMGGAVSGVAGSNWMLIGDAAACVNPLNGEGIDYGLETGRLAAELLDSR
DLARLWPSLLADRYGRGFSVARRLALLLTFPRFLPTTGPITMRSTALMNIAVRVMSNLVTDDDRDWVARVWRGGGQLSRL
VDRRPPFS

Sequences:

>Translated_408_residues
MSVDDSADVVVVGAGPAGSAAAAWAARAGRDVLVIDTATFPRDKPCGDGLTPRAVAELHQLGLGKWLADHIRHRGLRMSG
FGGEVEVDWPGPSFPSYGSAVARLELDDRIRKVAEDTGARMLLGAKAVAVHHDSSRRVVSLTLADGTEVGCRQLIVADGA
RSPLGRKLGRRWHRETVYGVAVRGYLSTAYSDDPWLTSHLELRSPDGAVLPGYGWIFPLGNGEVNIGVGALSTSRRPADL
ALRPLISYYTDLRRDEWGFTGQPRAVSSALLPMGGAVSGVAGSNWMLIGDAAACVNPLNGEGIDYGLETGRLAAELLDSR
DLARLWPSLLADRYGRGFSVARRLALLLTFPRFLPTTGPITMRSTALMNIAVRVMSNLVTDDDRDWVARVWRGGGQLSRL
VDRRPPFS
>Mature_407_residues
SVDDSADVVVVGAGPAGSAAAAWAARAGRDVLVIDTATFPRDKPCGDGLTPRAVAELHQLGLGKWLADHIRHRGLRMSGF
GGEVEVDWPGPSFPSYGSAVARLELDDRIRKVAEDTGARMLLGAKAVAVHHDSSRRVVSLTLADGTEVGCRQLIVADGAR
SPLGRKLGRRWHRETVYGVAVRGYLSTAYSDDPWLTSHLELRSPDGAVLPGYGWIFPLGNGEVNIGVGALSTSRRPADLA
LRPLISYYTDLRRDEWGFTGQPRAVSSALLPMGGAVSGVAGSNWMLIGDAAACVNPLNGEGIDYGLETGRLAAELLDSRD
LARLWPSLLADRYGRGFSVARRLALLLTFPRFLPTTGPITMRSTALMNIAVRVMSNLVTDDDRDWVARVWRGGGQLSRLV
DRRPPFS

Specific function: Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. DGGGPL reductase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR011777
- InterPro:   IPR003042 [H]

Pfam domain/function: PF07992 Pyr_redox_2 [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 43870; Mature: 43739

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDDSADVVVVGAGPAGSAAAAWAARAGRDVLVIDTATFPRDKPCGDGLTPRAVAELHQ
CCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
LGLGKWLADHIRHRGLRMSGFGGEVEVDWPGPSFPSYGSAVARLELDDRIRKVAEDTGAR
HCHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCE
MLLGAKAVAVHHDSSRRVVSLTLADGTEVGCRQLIVADGARSPLGRKLGRRWHRETVYGV
EEECCEEEEEEECCCCEEEEEEECCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHH
AVRGYLSTAYSDDPWLTSHLELRSPDGAVLPGYGWIFPLGNGEVNIGVGALSTSRRPADL
HHHHHHHHCCCCCCCEECEEEEECCCCCEECCCCEEEECCCCEEEEEEEECCCCCCCHHH
ALRPLISYYTDLRRDEWGFTGQPRAVSSALLPMGGAVSGVAGSNWMLIGDAAACVNPLNG
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCCCCC
EGIDYGLETGRLAAELLDSRDLARLWPSLLADRYGRGFSVARRLALLLTFPRFLPTTGPI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
TMRSTALMNIAVRVMSNLVTDDDRDWVARVWRGGGQLSRLVDRRPPFS
EEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
SVDDSADVVVVGAGPAGSAAAAWAARAGRDVLVIDTATFPRDKPCGDGLTPRAVAELHQ
CCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
LGLGKWLADHIRHRGLRMSGFGGEVEVDWPGPSFPSYGSAVARLELDDRIRKVAEDTGAR
HCHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCE
MLLGAKAVAVHHDSSRRVVSLTLADGTEVGCRQLIVADGARSPLGRKLGRRWHRETVYGV
EEECCEEEEEEECCCCEEEEEEECCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHH
AVRGYLSTAYSDDPWLTSHLELRSPDGAVLPGYGWIFPLGNGEVNIGVGALSTSRRPADL
HHHHHHHHCCCCCCCEECEEEEECCCCCEECCCCEEEECCCCEEEEEEEECCCCCCCHHH
ALRPLISYYTDLRRDEWGFTGQPRAVSSALLPMGGAVSGVAGSNWMLIGDAAACVNPLNG
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCCCCC
EGIDYGLETGRLAAELLDSRDLARLWPSLLADRYGRGFSVARRLALLLTFPRFLPTTGPI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
TMRSTALMNIAVRVMSNLVTDDDRDWVARVWRGGGQLSRLVDRRPPFS
EEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA