Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
---|---|
Accession | NC_009524 |
Length | 2,978,976 |
Click here to switch to the map view.
The map label for this gene is 148653538
Identifier: 148653538
GI number: 148653538
Start: 2154955
End: 2155923
Strand: Direct
Name: 148653538
Synonym: PsycPRwf_1741
Alternate gene names: NA
Gene position: 2154955-2155923 (Clockwise)
Preceding gene: 148653531
Following gene: 148653539
Centisome position: 72.34
GC content: 44.58
Gene sequence:
>969_bases ATGACCACTCAAACTTATAAATATAGCCAACATCCCGACACCCGCCCAGTGACTATTGCCTTAACAGCTGAACAGACAGC CGGTCATGGCGATCACTGGCGCATTTTAACTGACAAGGTAGAGGATGATGTGCCCAACTGGCTAAAAAGCTCTATTGATG ACGCCACCATTGCTGCAGGTTTACATGCTTCGCTTACCAAAGACAGCTTATCAAACCTTTTACTGTCGTGTAATCACATG TGCCATATCAATCAGGTACTGGCCATGAAACAGGGCAAACCGCAAAACTTTATTAACGCCTATCCTTGTGTTAATAGTCC TTACGGCCTCACCTGCAAAATTGAGCGCATCATCGCTAATGAGGATACTCAAGATGCCGTACTGCGCTTAGTTAGCGAAG ATGGCAGCGTGATTTATGCCTTCGACCAGATGTATACTGTGAACCAGTCTTTATACCGCCAAGATCAGCAGTATTTCGTG AACTTTAGCGCTTGGGCTTACTCGATTAAGCCAAGCAGCAAAGATGAGATCATTTTGGTAGAAGATCCAGAAGCCATCCG CTACCACCGTGCCTATAATGATATTGTCGCTAACAATAATGGTGTGATTCCCCAAGATTTAGACCAACAAATAGAGCAGT GGCAACCTGATAGTGACGAAGCTTTGGCTCCGGTTGAGATTAATCTAGGCAATATGTGTGCGTACTTATTTGGTGAAACC TTAGGCCAAGAAGATGAGGCTTGGTGCCAAGGCCAAGTGTTAGGCAAGCAGCAAGAGACGTTATATGATCGTCCATTGAC TGTTTTTGATGTGGCCATTTTGCGTGAGCCAGACGCCGATCCTTTTGTGGTACGTATGGCAACACCCACTACAGCTGAAG TCAGTGCTATTGAAGTCAATGATTACATTCAGGCCAATATTTGGCTGCAAGCGGCGATTTATTATGAAAATCAAAATAAT GCTGTTTAA
Upstream 100 bases:
>100_bases TTATATACTAAGGCGATATCACATATCCTTAGGTAATAACAGACCTTTAGCAAAGATGTAGCCACTCCTTAAAGCCAACC ATCAAAAGTATAAACATATT
Downstream 100 bases:
>100_bases TGTTTGATTAACTTAAATGCTTTAAGATATTGAATAAAAATAGCTCAGTAGACACACTGGGCTTTTTTTATGAAAAGATA AACATAAGGTGAAAATTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MTTQTYKYSQHPDTRPVTIALTAEQTAGHGDHWRILTDKVEDDVPNWLKSSIDDATIAAGLHASLTKDSLSNLLLSCNHM CHINQVLAMKQGKPQNFINAYPCVNSPYGLTCKIERIIANEDTQDAVLRLVSEDGSVIYAFDQMYTVNQSLYRQDQQYFV NFSAWAYSIKPSSKDEIILVEDPEAIRYHRAYNDIVANNNGVIPQDLDQQIEQWQPDSDEALAPVEINLGNMCAYLFGET LGQEDEAWCQGQVLGKQQETLYDRPLTVFDVAILREPDADPFVVRMATPTTAEVSAIEVNDYIQANIWLQAAIYYENQNN AV
Sequences:
>Translated_322_residues MTTQTYKYSQHPDTRPVTIALTAEQTAGHGDHWRILTDKVEDDVPNWLKSSIDDATIAAGLHASLTKDSLSNLLLSCNHM CHINQVLAMKQGKPQNFINAYPCVNSPYGLTCKIERIIANEDTQDAVLRLVSEDGSVIYAFDQMYTVNQSLYRQDQQYFV NFSAWAYSIKPSSKDEIILVEDPEAIRYHRAYNDIVANNNGVIPQDLDQQIEQWQPDSDEALAPVEINLGNMCAYLFGET LGQEDEAWCQGQVLGKQQETLYDRPLTVFDVAILREPDADPFVVRMATPTTAEVSAIEVNDYIQANIWLQAAIYYENQNN AV >Mature_321_residues TTQTYKYSQHPDTRPVTIALTAEQTAGHGDHWRILTDKVEDDVPNWLKSSIDDATIAAGLHASLTKDSLSNLLLSCNHMC HINQVLAMKQGKPQNFINAYPCVNSPYGLTCKIERIIANEDTQDAVLRLVSEDGSVIYAFDQMYTVNQSLYRQDQQYFVN FSAWAYSIKPSSKDEIILVEDPEAIRYHRAYNDIVANNNGVIPQDLDQQIEQWQPDSDEALAPVEINLGNMCAYLFGETL GQEDEAWCQGQVLGKQQETLYDRPLTVFDVAILREPDADPFVVRMATPTTAEVSAIEVNDYIQANIWLQAAIYYENQNNA V
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36319; Mature: 36188
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQTYKYSQHPDTRPVTIALTAEQTAGHGDHWRILTDKVEDDVPNWLKSSIDDATIAAG CCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEECCCHHCCCHHHHHHCCCCHHHHHC LHASLTKDSLSNLLLSCNHMCHINQVLAMKQGKPQNFINAYPCVNSPYGLTCKIERIIAN CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC EDTQDAVLRLVSEDGSVIYAFDQMYTVNQSLYRQDQQYFVNFSAWAYSIKPSSKDEIILV CCHHHHHHHHHCCCCCEEEEECCEEHHHHHHHHCCHHEEEEEEEEEEEECCCCCCCEEEE EDPEAIRYHRAYNDIVANNNGVIPQDLDQQIEQWQPDSDEALAPVEINLGNMCAYLFGET ECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHH LGQEDEAWCQGQVLGKQQETLYDRPLTVFDVAILREPDADPFVVRMATPTTAEVSAIEVN CCCCCCHHHCCEECCCHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEEEC DYIQANIWLQAAIYYENQNNAV CEEEEEEEEEEEEEEECCCCCC >Mature Secondary Structure TTQTYKYSQHPDTRPVTIALTAEQTAGHGDHWRILTDKVEDDVPNWLKSSIDDATIAAG CCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEECCCHHCCCHHHHHHCCCCHHHHHC LHASLTKDSLSNLLLSCNHMCHINQVLAMKQGKPQNFINAYPCVNSPYGLTCKIERIIAN CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC EDTQDAVLRLVSEDGSVIYAFDQMYTVNQSLYRQDQQYFVNFSAWAYSIKPSSKDEIILV CCHHHHHHHHHCCCCCEEEEECCEEHHHHHHHHCCHHEEEEEEEEEEEECCCCCCCEEEE EDPEAIRYHRAYNDIVANNNGVIPQDLDQQIEQWQPDSDEALAPVEINLGNMCAYLFGET ECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHH LGQEDEAWCQGQVLGKQQETLYDRPLTVFDVAILREPDADPFVVRMATPTTAEVSAIEVN CCCCCCHHHCCEECCCHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEEEC DYIQANIWLQAAIYYENQNNAV CEEEEEEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA