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The map label for this gene is lptA [H]

Identifier: 148652634

GI number: 148652634

Start: 979423

End: 979896

Strand: Direct

Name: lptA [H]

Synonym: PsycPRwf_0825

Alternate gene names: 148652634

Gene position: 979423-979896 (Clockwise)

Preceding gene: 148652633

Following gene: 148652635

Centisome position: 32.88

GC content: 48.95

Gene sequence:

>474_bases
ATGGTCTCATTTAATGCCAATGCTTTGCCCTCTGATGCGCAGCAACCTATCCATCTGTTGGCGGATAAAGCCACTTATAG
TGAGCGCACCGGTGTGACCTCCTACTCAGGCAATGTCACCATTACTCAAGGTACTTTAAAGCTTGCAGCAGATAATATTA
CCGTGAATTTATCTAATAGCCGCAGTATCTTATCCGCTGTCGCCACAGGCCGCCCAGCCACCATGCAGCAAGTGGTCACC
AAAGAAAAAGGCTTGGCTCGCGGTCAAGCCAACAAGATTGATTACAATGCCCAAAATGGTATTGTGACTTTGACCGGTAA
CGCCAAGCTTACCCAAAATGGCGCAAGTTTCGCCGGCAACGTTATTCGCTATAGCTTAAAAGTGGGTGACGTTGAGGCTA
CGGCAGGCGGCAGTCAGCGTGTTGAGCTTGTTTTCCCGCCCAGTGAATCCAATAGTCGTACAGGAATTAGGTAG

Upstream 100 bases:

>100_bases
CTCAAATACGCTAGCGCCAATACTCTCAACCCCGCACTCACCAAGCTTGATACCGGTGCTGAGCAAAATCACGCTTTTTG
CCGCCACTGCTTTGGCGTCT

Downstream 100 bases:

>100_bases
GTTATGAGTAACTCTGCATCGAATGCCCCAAAGCCTGAAGTGATAAGCCCTTTAGAGAAAACCCCCGTGTCGATAGCGCA
GCCGGTTAGCTCGGATACTG

Product: cell envelope biogenesis YhbN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MVSFNANALPSDAQQPIHLLADKATYSERTGVTSYSGNVTITQGTLKLAADNITVNLSNSRSILSAVATGRPATMQQVVT
KEKGLARGQANKIDYNAQNGIVTLTGNAKLTQNGASFAGNVIRYSLKVGDVEATAGGSQRVELVFPPSESNSRTGIR

Sequences:

>Translated_157_residues
MVSFNANALPSDAQQPIHLLADKATYSERTGVTSYSGNVTITQGTLKLAADNITVNLSNSRSILSAVATGRPATMQQVVT
KEKGLARGQANKIDYNAQNGIVTLTGNAKLTQNGASFAGNVIRYSLKVGDVEATAGGSQRVELVFPPSESNSRTGIR
>Mature_157_residues
MVSFNANALPSDAQQPIHLLADKATYSERTGVTSYSGNVTITQGTLKLAADNITVNLSNSRSILSAVATGRPATMQQVVT
KEKGLARGQANKIDYNAQNGIVTLTGNAKLTQNGASFAGNVIRYSLKVGDVEATAGGSQRVELVFPPSESNSRTGIR

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. May act as a chaperone that facilitates LPS transfer across the aquaeous environment of the periplasm. Interacts specifically with the lipid A domain

COG id: COG1934

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptA family [H]

Homologues:

Organism=Escherichia coli, GI1789592, Length=152, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014340
- InterPro:   IPR005653 [H]

Pfam domain/function: PF03968 OstA [H]

EC number: NA

Molecular weight: Translated: 16455; Mature: 16455

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSFNANALPSDAQQPIHLLADKATYSERTGVTSYSGNVTITQGTLKLAADNITVNLSNS
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCEEEEECEEEEEECEEEEEECCC
RSILSAVATGRPATMQQVVTKEKGLARGQANKIDYNAQNGIVTLTGNAKLTQNGASFAGN
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCEEECCCCCCCCC
VIRYSLKVGDVEATAGGSQRVELVFPPSESNSRTGIR
EEEEEEEECCEEECCCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MVSFNANALPSDAQQPIHLLADKATYSERTGVTSYSGNVTITQGTLKLAADNITVNLSNS
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCEEEEECEEEEEECEEEEEECCC
RSILSAVATGRPATMQQVVTKEKGLARGQANKIDYNAQNGIVTLTGNAKLTQNGASFAGN
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCEEECCCCCCCCC
VIRYSLKVGDVEATAGGSQRVELVFPPSESNSRTGIR
EEEEEEEECCEEECCCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]