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The map label for this gene is sodB [H]

Identifier: 148652121

GI number: 148652121

Start: 369362

End: 369991

Strand: Direct

Name: sodB [H]

Synonym: PsycPRwf_0309

Alternate gene names: 148652121

Gene position: 369362-369991 (Clockwise)

Preceding gene: 148652108

Following gene: 148652123

Centisome position: 12.4

GC content: 44.6

Gene sequence:

>630_bases
ATGTCAAACATTACTCTACCAGATCTTCCTTATGCAAAAGACGCACTTGAGCCACACATCAGTGCTGAAACTTTAGAATT
TCACCATGACAAGCACCATGCTGCTTATGTCAACAAGCTAAATGAATTGCTACCAGGTTCTGGTCTTGAAGGCAAAGCGC
TTGACGAAATCATCACTGCCACTGCTAAAGATGACAGCAAGCAAGGCATGTTCAACCAAGCTGCTCAAGTTTGGAACCAT
ACTTTTTACTGGAACTGCATGACTCCAGATAATGGTGGCGGCGAACCTACTGGTGATCTAAAAGCAAAAATCGAAGAAGA
TTTCGGTTCATACGACAAGTTCCGTGAAGAGTTCAAAAACGCAGCCACTTCACAGTTCGGTTCAGGTTGGGCGTGGTTGG
TAGCAGATTCTGTAGGCGGCAAACTGTCTATCATGAAAACTGCCAACGCTGATACACCACTAGCACACGGTAAAGTAGCG
GTTCTAACTTGTGACGTATGGGAACATGCTTACTACATCGATTACCGTAACCGTCGTCCTGACTATGTTGACACTTTCCT
AGAGAAGTTGGTTAACTGGGATTACGCAAACGCTAAGTACAAAGGTCAAGACGCAGGCGTTGAAGAATAA

Upstream 100 bases:

>100_bases
CCACTTAGCCTGAGCTGATGGGATATGCGCTTTAGCATGAACATCCTACCTATTTAAGATAGGTGAGAGCCGGGTTAACA
CAGCCAAAGGATAATATAAT

Downstream 100 bases:

>100_bases
GTTATTTACTCTCAATGTTTCAGTGTTAGACTCAATAAAAAAGGATGCCCTCGGGTATCCTTTTTTTATACCAGCATTAC
TTTCAGCACTGATAGCGCTT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSNITLPDLPYAKDALEPHISAETLEFHHDKHHAAYVNKLNELLPGSGLEGKALDEIITATAKDDSKQGMFNQAAQVWNH
TFYWNCMTPDNGGGEPTGDLKAKIEEDFGSYDKFREEFKNAATSQFGSGWAWLVADSVGGKLSIMKTANADTPLAHGKVA
VLTCDVWEHAYYIDYRNRRPDYVDTFLEKLVNWDYANAKYKGQDAGVEE

Sequences:

>Translated_209_residues
MSNITLPDLPYAKDALEPHISAETLEFHHDKHHAAYVNKLNELLPGSGLEGKALDEIITATAKDDSKQGMFNQAAQVWNH
TFYWNCMTPDNGGGEPTGDLKAKIEEDFGSYDKFREEFKNAATSQFGSGWAWLVADSVGGKLSIMKTANADTPLAHGKVA
VLTCDVWEHAYYIDYRNRRPDYVDTFLEKLVNWDYANAKYKGQDAGVEE
>Mature_208_residues
SNITLPDLPYAKDALEPHISAETLEFHHDKHHAAYVNKLNELLPGSGLEGKALDEIITATAKDDSKQGMFNQAAQVWNHT
FYWNCMTPDNGGGEPTGDLKAKIEEDFGSYDKFREEFKNAATSQFGSGWAWLVADSVGGKLSIMKTANADTPLAHGKVAV
LTCDVWEHAYYIDYRNRRPDYVDTFLEKLVNWDYANAKYKGQDAGVEE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=42.4242424242424, Blast_Score=154, Evalue=7e-38,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=42.4242424242424, Blast_Score=154, Evalue=7e-38,
Organism=Homo sapiens, GI67782309, Length=198, Percent_Identity=34.8484848484849, Blast_Score=117, Evalue=6e-27,
Organism=Escherichia coli, GI1787946, Length=190, Percent_Identity=57.8947368421053, Blast_Score=227, Evalue=4e-61,
Organism=Escherichia coli, GI1790342, Length=210, Percent_Identity=45.2380952380952, Blast_Score=169, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17506561, Length=205, Percent_Identity=37.0731707317073, Blast_Score=132, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=207, Percent_Identity=38.1642512077295, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6321796, Length=221, Percent_Identity=35.7466063348416, Blast_Score=117, Evalue=1e-27,
Organism=Drosophila melanogaster, GI17136812, Length=206, Percent_Identity=35.9223300970874, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23382; Mature: 23251

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNITLPDLPYAKDALEPHISAETLEFHHDKHHAAYVNKLNELLPGSGLEGKALDEIITA
CCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
TAKDDSKQGMFNQAAQVWNHTFYWNCMTPDNGGGEPTGDLKAKIEEDFGSYDKFREEFKN
HCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
AATSQFGSGWAWLVADSVGGKLSIMKTANADTPLAHGKVAVLTCDVWEHAYYIDYRNRRP
HHHHHCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCC
DYVDTFLEKLVNWDYANAKYKGQDAGVEE
CHHHHHHHHHHCCCCCCCEECCCCCCCCC
>Mature Secondary Structure 
SNITLPDLPYAKDALEPHISAETLEFHHDKHHAAYVNKLNELLPGSGLEGKALDEIITA
CCCCCCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
TAKDDSKQGMFNQAAQVWNHTFYWNCMTPDNGGGEPTGDLKAKIEEDFGSYDKFREEFKN
HCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
AATSQFGSGWAWLVADSVGGKLSIMKTANADTPLAHGKVAVLTCDVWEHAYYIDYRNRRP
HHHHHCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCC
DYVDTFLEKLVNWDYANAKYKGQDAGVEE
CHHHHHHHHHHCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2501651 [H]