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The map label for this gene is choA [H]

Identifier: 148651886

GI number: 148651886

Start: 84811

End: 86415

Strand: Direct

Name: choA [H]

Synonym: PsycPRwf_0069

Alternate gene names: 148651886

Gene position: 84811-86415 (Clockwise)

Preceding gene: 148651880

Following gene: 148651887

Centisome position: 2.85

GC content: 46.73

Gene sequence:

>1605_bases
ATGAAACGACGTAAATTTATTCAATCCATGGGGTTAGGTCTGGGCGCTTCGGCTACTTTAAGTGGCTGCCAGACTTTGGC
AAAAACTGCTCAGCCACTATCGGCGCCTCAAGTTCAAGCTGGACATTTTAGTAATATCATTGTGGGCAGTGGCTATGGTG
GCGCGGTATCAGCGCTGCGCCTGAGTGAGCAAGGCCACAAGGTACTTATCCTTGAGATGGGTATGCGCTGGGATAGAAGC
CCCAACCATGATACCTTTTGTAAAATGATTACCGCTGATGAGCGCTCCAGCTGGTTTAGTCATTGGCCCAATGCCCCCAT
TCCCATCCCCATTCCTATTAAAAAATATCCTGGGGTGCTCGATTTGATTGAGTATGATGACATGAAGGTGTTTGCAGGTC
GGGCCTATGGCGGCGGCTCGATTGTCAATGGAGCGATTGCTATTGAGCCTAGACGGTCACATTTTGAGCAGACCTTTCCT
TGGATTGATGCCAATGAAATGTATGACACTTTTTTTCCGCGTGCCATGAAGACCTTAAAGGTCAGTAAAATTCCCGAAGA
CTTTTTTAATAACTCTGAGCACTATGAATATACGCGCGCCGCTGAGCGTCAGGCTGATAAAGCGGGGCTAACTACGGAGT
TTTTTGGCAATAGTTATGACTTTGACTATATGCAAAAAGAGGCAAAAGGGGAGGTGTACCCATCGGCTTTAGGCGGTGAG
GTGATCTATGGCAATAATGCAGGCAAGTACTCTTTGGATTTGACCTATCTTAAACAGGCAGAAGCTACCGGTAATGTCAG
TGTCAGAACCCTACGTAAAGTTAATAGCATTCAAGCACTTGATAACCATCAACTCAGACTTGAGGTGCAGGTACTCAATA
AAACCGGCGGCATTGATGCCATAGAATATTACACCTGCGATAAATTGTTTTTGAATGCCGGCAGTACCGGCACCTCAGAG
CTGCTGCTAAAGAGCCAAGCTCAGGGTAAATTGACTCAGCTTAATGAGCACATTGGGCAGCATTGGGGGCCCAATGGTAA
TATCATGACCGGCCGCAATTTTGTACATGCTGCAGGTAAGATTCAGTCCACCATTCCGGTTAAAGGGATCAACATGTGGG
ATGGTGATAGAGGTGGATCAAAGTACAAGATATTTGCCGAATTGGCACCGCTGCCGTTGGGTCTTGAGACTTGGACCACC
TTGTACTTGGCAATTACCGATAACCCAGAGCGTGGTCATTATTATTATGATAAAGCCTCGCAAAGCGTAAAACTTAATTG
GAAACGCTCACAAAATGAGTATTCAGTGAATGCCGCAAAAGAGCTGATTGAAAAATTGGCTCAGGCGAATGGCGGGCGGG
TATCAAGCTTACTGTTTAACCAAGGTTTTGGGGATGACTTCTGCTATCATCCCTTAGGTGGCTGTGTGCTTGGCAAGGCC
ACAGATGAATTGGGCCGTGTCAAAGGCCATCGCAATATTTATGTACAAGACGGGGCGCTTATTCCTGGCAGTGCTGGGGT
TAACCCTTATGTCTTTATTACTGGGCTTGCTGAGCGTAATATGGCCTATATCCTTCAACAAGACTTCTCGTCGTCGACCC
CTTAA

Upstream 100 bases:

>100_bases
CGGATACTTTAGGTTAGCTAAAACTACGTTTGCTATAAAATACAGTAAGTAAATCTTGTTACACTGTGGTTATGAGTAAA
AATAAAAAGGCGGCAATTTA

Downstream 100 bases:

>100_bases
GGAGGGCATTGTGACCTTGCCCATTAAACTTCGTATTTTAAAATCCTCTGTGACCAATCCGTGGTTTAACTTGGCCACCG
AAGATTGGATATTCCAAGAG

Product: cholesterol oxidase

Products: NA

Alternate protein names: CHOD [H]

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MKRRKFIQSMGLGLGASATLSGCQTLAKTAQPLSAPQVQAGHFSNIIVGSGYGGAVSALRLSEQGHKVLILEMGMRWDRS
PNHDTFCKMITADERSSWFSHWPNAPIPIPIPIKKYPGVLDLIEYDDMKVFAGRAYGGGSIVNGAIAIEPRRSHFEQTFP
WIDANEMYDTFFPRAMKTLKVSKIPEDFFNNSEHYEYTRAAERQADKAGLTTEFFGNSYDFDYMQKEAKGEVYPSALGGE
VIYGNNAGKYSLDLTYLKQAEATGNVSVRTLRKVNSIQALDNHQLRLEVQVLNKTGGIDAIEYYTCDKLFLNAGSTGTSE
LLLKSQAQGKLTQLNEHIGQHWGPNGNIMTGRNFVHAAGKIQSTIPVKGINMWDGDRGGSKYKIFAELAPLPLGLETWTT
LYLAITDNPERGHYYYDKASQSVKLNWKRSQNEYSVNAAKELIEKLAQANGGRVSSLLFNQGFGDDFCYHPLGGCVLGKA
TDELGRVKGHRNIYVQDGALIPGSAGVNPYVFITGLAERNMAYILQQDFSSSTP

Sequences:

>Translated_534_residues
MKRRKFIQSMGLGLGASATLSGCQTLAKTAQPLSAPQVQAGHFSNIIVGSGYGGAVSALRLSEQGHKVLILEMGMRWDRS
PNHDTFCKMITADERSSWFSHWPNAPIPIPIPIKKYPGVLDLIEYDDMKVFAGRAYGGGSIVNGAIAIEPRRSHFEQTFP
WIDANEMYDTFFPRAMKTLKVSKIPEDFFNNSEHYEYTRAAERQADKAGLTTEFFGNSYDFDYMQKEAKGEVYPSALGGE
VIYGNNAGKYSLDLTYLKQAEATGNVSVRTLRKVNSIQALDNHQLRLEVQVLNKTGGIDAIEYYTCDKLFLNAGSTGTSE
LLLKSQAQGKLTQLNEHIGQHWGPNGNIMTGRNFVHAAGKIQSTIPVKGINMWDGDRGGSKYKIFAELAPLPLGLETWTT
LYLAITDNPERGHYYYDKASQSVKLNWKRSQNEYSVNAAKELIEKLAQANGGRVSSLLFNQGFGDDFCYHPLGGCVLGKA
TDELGRVKGHRNIYVQDGALIPGSAGVNPYVFITGLAERNMAYILQQDFSSSTP
>Mature_534_residues
MKRRKFIQSMGLGLGASATLSGCQTLAKTAQPLSAPQVQAGHFSNIIVGSGYGGAVSALRLSEQGHKVLILEMGMRWDRS
PNHDTFCKMITADERSSWFSHWPNAPIPIPIPIKKYPGVLDLIEYDDMKVFAGRAYGGGSIVNGAIAIEPRRSHFEQTFP
WIDANEMYDTFFPRAMKTLKVSKIPEDFFNNSEHYEYTRAAERQADKAGLTTEFFGNSYDFDYMQKEAKGEVYPSALGGE
VIYGNNAGKYSLDLTYLKQAEATGNVSVRTLRKVNSIQALDNHQLRLEVQVLNKTGGIDAIEYYTCDKLFLNAGSTGTSE
LLLKSQAQGKLTQLNEHIGQHWGPNGNIMTGRNFVHAAGKIQSTIPVKGINMWDGDRGGSKYKIFAELAPLPLGLETWTT
LYLAITDNPERGHYYYDKASQSVKLNWKRSQNEYSVNAAKELIEKLAQANGGRVSSLLFNQGFGDDFCYHPLGGCVLGKA
TDELGRVKGHRNIYVQDGALIPGSAGVNPYVFITGLAERNMAYILQQDFSSSTP

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: =1.1.3.6 [H]

Molecular weight: Translated: 58996; Mature: 58996

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRKFIQSMGLGLGASATLSGCQTLAKTAQPLSAPQVQAGHFSNIIVGSGYGGAVSALR
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHEE
LSEQGHKVLILEMGMRWDRSPNHDTFCKMITADERSSWFSHWPNAPIPIPIPIKKYPGVL
ECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCHHHCCCEE
DLIEYDDMKVFAGRAYGGGSIVNGAIAIEPRRSHFEQTFPWIDANEMYDTFFPRAMKTLK
EEEECCCEEEEEECCCCCCCEECCEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VSKIPEDFFNNSEHYEYTRAAERQADKAGLTTEFFGNSYDFDYMQKEAKGEVYPSALGGE
HHCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCE
VIYGNNAGKYSLDLTYLKQAEATGNVSVRTLRKVNSIQALDNHQLRLEVQVLNKTGGIDA
EEECCCCCEEEEEEHEEECCCCCCCEEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCE
IEYYTCDKLFLNAGSTGTSELLLKSQAQGKLTQLNEHIGQHWGPNGNIMTGRNFVHAAGK
EEEEEECEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEECCC
IQSTIPVKGINMWDGDRGGSKYKIFAELAPLPLGLETWTTLYLAITDNPERGHYYYDKAS
CCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCEEECCCC
QSVKLNWKRSQNEYSVNAAKELIEKLAQANGGRVSSLLFNQGFGDDFCYHPLGGCVLGKA
CEEEEEEECCCCCEEHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCEEECCC
TDELGRVKGHRNIYVQDGALIPGSAGVNPYVFITGLAERNMAYILQQDFSSSTP
HHHHHHCCCCCEEEEECCEECCCCCCCCCEEEEEEECCCCCEEEEHHCCCCCCC
>Mature Secondary Structure
MKRRKFIQSMGLGLGASATLSGCQTLAKTAQPLSAPQVQAGHFSNIIVGSGYGGAVSALR
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHEE
LSEQGHKVLILEMGMRWDRSPNHDTFCKMITADERSSWFSHWPNAPIPIPIPIKKYPGVL
ECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCHHHCCCEE
DLIEYDDMKVFAGRAYGGGSIVNGAIAIEPRRSHFEQTFPWIDANEMYDTFFPRAMKTLK
EEEECCCEEEEEECCCCCCCEECCEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VSKIPEDFFNNSEHYEYTRAAERQADKAGLTTEFFGNSYDFDYMQKEAKGEVYPSALGGE
HHCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCE
VIYGNNAGKYSLDLTYLKQAEATGNVSVRTLRKVNSIQALDNHQLRLEVQVLNKTGGIDA
EEECCCCCEEEEEEHEEECCCCCCCEEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCE
IEYYTCDKLFLNAGSTGTSELLLKSQAQGKLTQLNEHIGQHWGPNGNIMTGRNFVHAAGK
EEEEEECEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEECCC
IQSTIPVKGINMWDGDRGGSKYKIFAELAPLPLGLETWTTLYLAITDNPERGHYYYDKAS
CCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCEEECCCC
QSVKLNWKRSQNEYSVNAAKELIEKLAQANGGRVSSLLFNQGFGDDFCYHPLGGCVLGKA
CEEEEEEECCCCCEEHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCEEECCC
TDELGRVKGHRNIYVQDGALIPGSAGVNPYVFITGLAERNMAYILQQDFSSSTP
HHHHHHCCCCCEEEEECCEECCCCCCCCCEEEEEEECCCCCEEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2914858; 10194345 [H]