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The map label for this gene is mdcF [H]

Identifier: 148651826

GI number: 148651826

Start: 12247

End: 13194

Strand: Direct

Name: mdcF [H]

Synonym: PsycPRwf_0009

Alternate gene names: 148651826

Gene position: 12247-13194 (Clockwise)

Preceding gene: 148651825

Following gene: 148651829

Centisome position: 0.41

GC content: 45.36

Gene sequence:

>948_bases
ATGTTGGATATTATTAACATCACCGCCCCTATTTTTATCATTATCGCGCTGGGTTATTTAACGGTAAGATTGAAGGTGAT
TGACCCCAGGCACGCCAAAGGCATGGGCAGTCTGGTGTTAAAGATTGCTTTGCCAGCTTTGGTGTTCAATGCAATTGCTG
ATATGCCCTTTGAAGAGGTGATACGGCCATATTATCTCATTATTTATGGGCTTGGCTCGCTGCTGGCCTTTGTCATCGGT
CTGATACTGACCAAGCTTATTTGGAAACAAGACAATGTTTCTGCTGCGCTGAATTCTACAGCGCTATCCTTCTCCAACAG
TGCTTTTATCGGTTATGCCGTTGCGGCTATGGTTGTTGGCTCAAGTGTTGCCGCCAGCTATCTATCGATGGGCGTCATTA
TTGAAAACCTACTGATTCTGCCGATGCTGTTTATCATGGCAGAGCTGAACGGAAATTCTGGTAAGTCATTGGCCGGCGTG
TTGTTAGGTATCGCCAAAAACTTTACCCGTAATCCGCTGATTATCTCTATTGTGGTCAGCATTGTGTTTTCTATCTTTCG
TCTGCCTATCCCCTCAATAGTGGCTGGAACCATTAAAATGCTTACGGGTGCGGCCGCTCCTGTTGCGTTATTTGTGATTG
GGATGAGCTTGTATGCGCTTGAGCTAAAGGGGGATTTGCCTAAGATTACTACTATTGGCCTGGGTAAGCTGATTGTGCAT
CCATTGATGATACTGCTGGCCATCAGCATGATATCAGGCGGTAGCTTACAAGATAACTATGTCGCTATGCTGTTTGCCTC
AGCCCCCGTATTTTCGACCATTGCTATTATTGGTCAGCATTATGGTCTGGTCAATCGTATGTCTGCCATCGTGATTGTCT
CCACCATTGGCTCGTTTTTTAGTATGAGTGCGGTGCTGATTTATTGGAAGATGACGATTGGGTTTTAG

Upstream 100 bases:

>100_bases
CTAGGTTTGAATAAAACCAGGGCGAACTGAGTCGATTATCATCAATACCGCCTTTGAGCGATCTGTATTTCTATCCTGCC
GATAAGAGGCAACCTTATAT

Downstream 100 bases:

>100_bases
AGGGGTGAAAAGGTTTTTATAAACCAAATAAATAGATATTGAGCTGATCCCGCTTTTCGCTACTATCTGTCGTCTTAAGT
GGGGCGATGCGCTAAGGTTT

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MLDIINITAPIFIIIALGYLTVRLKVIDPRHAKGMGSLVLKIALPALVFNAIADMPFEEVIRPYYLIIYGLGSLLAFVIG
LILTKLIWKQDNVSAALNSTALSFSNSAFIGYAVAAMVVGSSVAASYLSMGVIIENLLILPMLFIMAELNGNSGKSLAGV
LLGIAKNFTRNPLIISIVVSIVFSIFRLPIPSIVAGTIKMLTGAAAPVALFVIGMSLYALELKGDLPKITTIGLGKLIVH
PLMILLAISMISGGSLQDNYVAMLFASAPVFSTIAIIGQHYGLVNRMSAIVIVSTIGSFFSMSAVLIYWKMTIGF

Sequences:

>Translated_315_residues
MLDIINITAPIFIIIALGYLTVRLKVIDPRHAKGMGSLVLKIALPALVFNAIADMPFEEVIRPYYLIIYGLGSLLAFVIG
LILTKLIWKQDNVSAALNSTALSFSNSAFIGYAVAAMVVGSSVAASYLSMGVIIENLLILPMLFIMAELNGNSGKSLAGV
LLGIAKNFTRNPLIISIVVSIVFSIFRLPIPSIVAGTIKMLTGAAAPVALFVIGMSLYALELKGDLPKITTIGLGKLIVH
PLMILLAISMISGGSLQDNYVAMLFASAPVFSTIAIIGQHYGLVNRMSAIVIVSTIGSFFSMSAVLIYWKMTIGF
>Mature_315_residues
MLDIINITAPIFIIIALGYLTVRLKVIDPRHAKGMGSLVLKIALPALVFNAIADMPFEEVIRPYYLIIYGLGSLLAFVIG
LILTKLIWKQDNVSAALNSTALSFSNSAFIGYAVAAMVVGSSVAASYLSMGVIIENLLILPMLFIMAELNGNSGKSLAGV
LLGIAKNFTRNPLIISIVVSIVFSIFRLPIPSIVAGTIKMLTGAAAPVALFVIGMSLYALELKGDLPKITTIGLGKLIVH
PLMILLAISMISGGSLQDNYVAMLFASAPVFSTIAIIGQHYGLVNRMSAIVIVSTIGSFFSMSAVLIYWKMTIGF

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33543; Mature: 33543

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDIINITAPIFIIIALGYLTVRLKVIDPRHAKGMGSLVLKIALPALVFNAIADMPFEEV
CCEEEHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
IRPYYLIIYGLGSLLAFVIGLILTKLIWKQDNVSAALNSTALSFSNSAFIGYAVAAMVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
SSVAASYLSMGVIIENLLILPMLFIMAELNGNSGKSLAGVLLGIAKNFTRNPLIISIVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
IVFSIFRLPIPSIVAGTIKMLTGAAAPVALFVIGMSLYALELKGDLPKITTIGLGKLIVH
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHH
PLMILLAISMISGGSLQDNYVAMLFASAPVFSTIAIIGQHYGLVNRMSAIVIVSTIGSFF
HHHHHHHHHHHCCCCCCCCHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMSAVLIYWKMTIGF
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDIINITAPIFIIIALGYLTVRLKVIDPRHAKGMGSLVLKIALPALVFNAIADMPFEEV
CCEEEHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
IRPYYLIIYGLGSLLAFVIGLILTKLIWKQDNVSAALNSTALSFSNSAFIGYAVAAMVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
SSVAASYLSMGVIIENLLILPMLFIMAELNGNSGKSLAGVLLGIAKNFTRNPLIISIVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
IVFSIFRLPIPSIVAGTIKMLTGAAAPVALFVIGMSLYALELKGDLPKITTIGLGKLIVH
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHH
PLMILLAISMISGGSLQDNYVAMLFASAPVFSTIAIIGQHYGLVNRMSAIVIVSTIGSFF
HHHHHHHHHHHCCCCCCCCHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMSAVLIYWKMTIGF
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]