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The map label for this gene is traH [H]

Identifier: 148550818

GI number: 148550818

Start: 287537

End: 289000

Strand: Direct

Name: traH [H]

Synonym: Swit_5382

Alternate gene names: 148550818

Gene position: 287537-289000 (Clockwise)

Preceding gene: 148550817

Following gene: 148550819

Centisome position: 92.69

GC content: 62.09

Gene sequence:

>1464_bases
ATGGCACGCAAGAGTTCCGGACGGGCACGGGCGGCGATCCGGCGCCTCGCTCATGGCGCCGCCATATTGGCGGCATCGCA
TTTCGCGCTGGTGGGCGTTGCCCATGCCGATGTCGCGGGCCAGATGAACAGCTTCTTCAACGACGCGGGCGGTGCGGCCA
ATGTGACGGGCCCAAGCGCCTTCCAGGGCCAGTCGGCCGGCTACTATTCGATGGGCAACGTCTGGACGCGCTTCCCGCAG
AAATCGGTGTCGCCGTTCAACCTGCAGTTGCCCAGTGCCCGGGCGGGCTGCGGCGGCATCGACCTCTTTTCCGGGTCCTT
CTCCTTCATCAATGCCTCCGAGATCGTGGCGATGCTCAAGGCCACCGCCAACAACGCACTTGGCTTTGCCTTCAAGCTCG
CGATTGATTCCGTATCTCCGGAAATCGGCAAGGTGATGGACGAGTTCAGCCAGAAGGCGCAGCTCCTCAACCAGATGAAC
ATCTCGAGCTGCGAGACCGCGCAGGCGCTGGTTGGCGGCATCTGGCCGCAGATGGACACCACCCGCTCGACCATCTGCGA
AGCCATCGGCAACAGCCAGGGCATATTCTCGGACTGGGCCGCCTCACGGCAGGGCTGCAACAACGGCAACCAGCGCGATA
ACACGATCGCCGGAAACAGCGATGCGTCGATGAAGGACCAGCTTGTCGGCGAGCCGCATAACTATACCTGGGAGGCCTTG
AAGAAGGCAGGCAAGTTCGGCGCGTTCGACCAGAGCTTCTCCGAATTCATCATGACCCTGGTCGGCACGGTAATCACGAA
GCCGTCGGACGATCCGAGTGTCGGCGGCAAGGTCGTGATGATCGGCCCGGCCGAAGACGCCGTGGTAACCGCGCTTCTGG
ATGGTACGGCCGATGCGCCGCCGGTGAAGCTCCTCAAATGCAACGACGAGAACTGCTACGAGGTCGGCGAGCAGACGCTG
TCGGTGCCAGCATCGTCCGCGTTACGCCCGCGGATCGAAGCGCTGATCCAGTCGATGAACGACAAGATCCGCAGCGATAC
GCCACTCGATGCCGCGGAAAAGCAGCTTCTGAACATCGCGACGGTGCCGATTTTCAAGATCCTGAGCGTCCAGGCTTATG
CGCATTACTCGCTGTCGCCCGGCGAGATCCAGGCAATGTCAGAGATCGTCGCGGTCGACCTGTTGACCGCTATGCTCGAC
AATATGATGGACCGGGTCGAGCAAAGCCAGGTTCATTACCAGACCTTCGACCAGGCTACCGCGGCCCAGTGGAAGGCGCA
GATCGCCGCTGCCCGCGCTAAATACGCGCAGCGCGACGTCAAGCTCAACAACAAGCTGCAGGTCACGATGCAGCTCATCA
ACCGCAGCATGATGCTCGAGTCCACCCTGCAGAATTCGATGACGCCGGGCATGGCTTCGGCGCTGACCTTCTCGCGCGGG
CTGAGCTCGCAGGGGCTGAACTGA

Upstream 100 bases:

>100_bases
CGAAGCGGACGATCCCGGTCGGGTACGGCATCCTCAGCGCCGATGAGATCATGGACCGGATCTTCATGCTCACCAACACC
AAGGTGGGGAGTGACTACTG

Downstream 100 bases:

>100_bases
AGCCGGGGAACAGGCGATGCTAGAGGTCTTCACGGTCGGTGGCGGCGAATATCTGGTCAACACCTTCAATGCTGTAGCGG
CCTGGTCAGGGGGCGGGGGC

Product: TraH family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MARKSSGRARAAIRRLAHGAAILAASHFALVGVAHADVAGQMNSFFNDAGGAANVTGPSAFQGQSAGYYSMGNVWTRFPQ
KSVSPFNLQLPSARAGCGGIDLFSGSFSFINASEIVAMLKATANNALGFAFKLAIDSVSPEIGKVMDEFSQKAQLLNQMN
ISSCETAQALVGGIWPQMDTTRSTICEAIGNSQGIFSDWAASRQGCNNGNQRDNTIAGNSDASMKDQLVGEPHNYTWEAL
KKAGKFGAFDQSFSEFIMTLVGTVITKPSDDPSVGGKVVMIGPAEDAVVTALLDGTADAPPVKLLKCNDENCYEVGEQTL
SVPASSALRPRIEALIQSMNDKIRSDTPLDAAEKQLLNIATVPIFKILSVQAYAHYSLSPGEIQAMSEIVAVDLLTAMLD
NMMDRVEQSQVHYQTFDQATAAQWKAQIAAARAKYAQRDVKLNNKLQVTMQLINRSMMLESTLQNSMTPGMASALTFSRG
LSSQGLN

Sequences:

>Translated_487_residues
MARKSSGRARAAIRRLAHGAAILAASHFALVGVAHADVAGQMNSFFNDAGGAANVTGPSAFQGQSAGYYSMGNVWTRFPQ
KSVSPFNLQLPSARAGCGGIDLFSGSFSFINASEIVAMLKATANNALGFAFKLAIDSVSPEIGKVMDEFSQKAQLLNQMN
ISSCETAQALVGGIWPQMDTTRSTICEAIGNSQGIFSDWAASRQGCNNGNQRDNTIAGNSDASMKDQLVGEPHNYTWEAL
KKAGKFGAFDQSFSEFIMTLVGTVITKPSDDPSVGGKVVMIGPAEDAVVTALLDGTADAPPVKLLKCNDENCYEVGEQTL
SVPASSALRPRIEALIQSMNDKIRSDTPLDAAEKQLLNIATVPIFKILSVQAYAHYSLSPGEIQAMSEIVAVDLLTAMLD
NMMDRVEQSQVHYQTFDQATAAQWKAQIAAARAKYAQRDVKLNNKLQVTMQLINRSMMLESTLQNSMTPGMASALTFSRG
LSSQGLN
>Mature_486_residues
ARKSSGRARAAIRRLAHGAAILAASHFALVGVAHADVAGQMNSFFNDAGGAANVTGPSAFQGQSAGYYSMGNVWTRFPQK
SVSPFNLQLPSARAGCGGIDLFSGSFSFINASEIVAMLKATANNALGFAFKLAIDSVSPEIGKVMDEFSQKAQLLNQMNI
SSCETAQALVGGIWPQMDTTRSTICEAIGNSQGIFSDWAASRQGCNNGNQRDNTIAGNSDASMKDQLVGEPHNYTWEALK
KAGKFGAFDQSFSEFIMTLVGTVITKPSDDPSVGGKVVMIGPAEDAVVTALLDGTADAPPVKLLKCNDENCYEVGEQTLS
VPASSALRPRIEALIQSMNDKIRSDTPLDAAEKQLLNIATVPIFKILSVQAYAHYSLSPGEIQAMSEIVAVDLLTAMLDN
MMDRVEQSQVHYQTFDQATAAQWKAQIAAARAKYAQRDVKLNNKLQVTMQLINRSMMLESTLQNSMTPGMASALTFSRGL
SSQGLN

Specific function: Involved in pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010927 [H]

Pfam domain/function: PF06122 TraH [H]

EC number: NA

Molecular weight: Translated: 51992; Mature: 51861

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKSSGRARAAIRRLAHGAAILAASHFALVGVAHADVAGQMNSFFNDAGGAANVTGPSA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
FQGQSAGYYSMGNVWTRFPQKSVSPFNLQLPSARAGCGGIDLFSGSFSFINASEIVAMLK
CCCCCCCEECCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHH
ATANNALGFAFKLAIDSVSPEIGKVMDEFSQKAQLLNQMNISSCETAQALVGGIWPQMDT
HHCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCH
TRSTICEAIGNSQGIFSDWAASRQGCNNGNQRDNTIAGNSDASMKDQLVGEPHNYTWEAL
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
KKAGKFGAFDQSFSEFIMTLVGTVITKPSDDPSVGGKVVMIGPAEDAVVTALLDGTADAP
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCC
PVKLLKCNDENCYEVGEQTLSVPASSALRPRIEALIQSMNDKIRSDTPLDAAEKQLLNIA
CEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TVPIFKILSVQAYAHYSLSPGEIQAMSEIVAVDLLTAMLDNMMDRVEQSQVHYQTFDQAT
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAQWKAQIAAARAKYAQRDVKLNNKLQVTMQLINRSMMLESTLQNSMTPGMASALTFSRG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
LSSQGLN
CCCCCCC
>Mature Secondary Structure 
ARKSSGRARAAIRRLAHGAAILAASHFALVGVAHADVAGQMNSFFNDAGGAANVTGPSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
FQGQSAGYYSMGNVWTRFPQKSVSPFNLQLPSARAGCGGIDLFSGSFSFINASEIVAMLK
CCCCCCCEECCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHH
ATANNALGFAFKLAIDSVSPEIGKVMDEFSQKAQLLNQMNISSCETAQALVGGIWPQMDT
HHCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCH
TRSTICEAIGNSQGIFSDWAASRQGCNNGNQRDNTIAGNSDASMKDQLVGEPHNYTWEAL
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
KKAGKFGAFDQSFSEFIMTLVGTVITKPSDDPSVGGKVVMIGPAEDAVVTALLDGTADAP
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCC
PVKLLKCNDENCYEVGEQTLSVPASSALRPRIEALIQSMNDKIRSDTPLDAAEKQLLNIA
CEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TVPIFKILSVQAYAHYSLSPGEIQAMSEIVAVDLLTAMLDNMMDRVEQSQVHYQTFDQAT
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAQWKAQIAAARAKYAQRDVKLNNKLQVTMQLINRSMMLESTLQNSMTPGMASALTFSRG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
LSSQGLN
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1348105; 7915817; 2656408 [H]