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The map label for this gene is traF [H]

Identifier: 148550817

GI number: 148550817

Start: 286722

End: 287537

Strand: Direct

Name: traF [H]

Synonym: Swit_5381

Alternate gene names: 148550817

Gene position: 286722-287537 (Clockwise)

Preceding gene: 148550816

Following gene: 148550818

Centisome position: 92.42

GC content: 64.09

Gene sequence:

>816_bases
ATGTCGAAGTTCACTAGGATTTGCGCAGTGGTTCTGGCGCTGATGCCCATGGCTGTTGACGCGCAGGAGGCAGGGGCAGG
CCGCGACACGATCGACGGGCAATCGCCCGACGACTTCTATTGTGGCGAGCGCCGCCTGGGGCAATGGTTCTATTGCTCGA
AACCCAAGCCGCGCGAGACCCGCCCAGCGTCGCCGCAGGCGCCCGAGCCCTCGGCTGCCGAACGCATGGCCGCGATTGCG
AAGGAGCTCGATGAGCTCAAGGCCCGCGCGATCCTTGACCCCTCCGAAGAGAATGTCATCGCCTATGTGCGCTTCCAGCG
CGAGCAGCTCGACCGGGCCTCGACTTTCGCCGATACGTGGCAGCGCGCTCTCTGGCAGCATCCCGACATCGACTACACGC
TGCAGCGTCCGGTTTCGACGGTCGGCAAACGGGCCTGGCTCGACAATCGCAAGGCGGATCGGGATGCTGTCCTGACGAGC
CTCGGCCAGCGCTACGGGCTTTTCTATTTCTATGCGCAAAGCTGCGGCGCCTGCGAGCTCTTCGCGCCGATCCTGCGCTC
GGTCGCCGACAGCCATCGGATGGCGGTCATGGCGGTCTCGATGGATGGTGGCCCGAACAAGGAATTTCCCAACTATGTCG
TCGACACGGGCCAGCGTGCCCGCATGGGACTGACCGGCAACGAGACGCCGGCGCTGGTCCTGTTCGACACCCAGACGAAG
CGGACGATCCCGGTCGGGTACGGCATCCTCAGCGCCGATGAGATCATGGACCGGATCTTCATGCTCACCAACACCAAGGT
GGGGAGTGACTACTGA

Upstream 100 bases:

>100_bases
GATTGCTGCGTCCACCCCCCGGCGCTCGACCCGTCGGCCGCCCGCCCTTCCGCGCCTCACTTTGCCGCTGCGCCACAGCC
GCAGGAAAGGATCCCGAGCC

Downstream 100 bases:

>100_bases
TGGCACGCAAGAGTTCCGGACGGGCACGGGCGGCGATCCGGCGCCTCGCTCATGGCGCCGCCATATTGGCGGCATCGCAT
TTCGCGCTGGTGGGCGTTGC

Product: TraF-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSKFTRICAVVLALMPMAVDAQEAGAGRDTIDGQSPDDFYCGERRLGQWFYCSKPKPRETRPASPQAPEPSAAERMAAIA
KELDELKARAILDPSEENVIAYVRFQREQLDRASTFADTWQRALWQHPDIDYTLQRPVSTVGKRAWLDNRKADRDAVLTS
LGQRYGLFYFYAQSCGACELFAPILRSVADSHRMAVMAVSMDGGPNKEFPNYVVDTGQRARMGLTGNETPALVLFDTQTK
RTIPVGYGILSADEIMDRIFMLTNTKVGSDY

Sequences:

>Translated_271_residues
MSKFTRICAVVLALMPMAVDAQEAGAGRDTIDGQSPDDFYCGERRLGQWFYCSKPKPRETRPASPQAPEPSAAERMAAIA
KELDELKARAILDPSEENVIAYVRFQREQLDRASTFADTWQRALWQHPDIDYTLQRPVSTVGKRAWLDNRKADRDAVLTS
LGQRYGLFYFYAQSCGACELFAPILRSVADSHRMAVMAVSMDGGPNKEFPNYVVDTGQRARMGLTGNETPALVLFDTQTK
RTIPVGYGILSADEIMDRIFMLTNTKVGSDY
>Mature_270_residues
SKFTRICAVVLALMPMAVDAQEAGAGRDTIDGQSPDDFYCGERRLGQWFYCSKPKPRETRPASPQAPEPSAAERMAAIAK
ELDELKARAILDPSEENVIAYVRFQREQLDRASTFADTWQRALWQHPDIDYTLQRPVSTVGKRAWLDNRKADRDAVLTSL
GQRYGLFYFYAQSCGACELFAPILRSVADSHRMAVMAVSMDGGPNKEFPNYVVDTGQRARMGLTGNETPALVLFDTQTKR
TIPVGYGILSADEIMDRIFMLTNTKVGSDY

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014110 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30310; Mature: 30179

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFTRICAVVLALMPMAVDAQEAGAGRDTIDGQSPDDFYCGERRLGQWFYCSKPKPRET
CCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCCC
RPASPQAPEPSAAERMAAIAKELDELKARAILDPSEENVIAYVRFQREQLDRASTFADTW
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHH
QRALWQHPDIDYTLQRPVSTVGKRAWLDNRKADRDAVLTSLGQRYGLFYFYAQSCGACEL
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCCCCCHHH
FAPILRSVADSHRMAVMAVSMDGGPNKEFPNYVVDTGQRARMGLTGNETPALVLFDTQTK
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCCEEECCCCCCCCEEEEEECCCC
RTIPVGYGILSADEIMDRIFMLTNTKVGSDY
EEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKFTRICAVVLALMPMAVDAQEAGAGRDTIDGQSPDDFYCGERRLGQWFYCSKPKPRET
CHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCCC
RPASPQAPEPSAAERMAAIAKELDELKARAILDPSEENVIAYVRFQREQLDRASTFADTW
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHH
QRALWQHPDIDYTLQRPVSTVGKRAWLDNRKADRDAVLTSLGQRYGLFYFYAQSCGACEL
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCCCCCHHH
FAPILRSVADSHRMAVMAVSMDGGPNKEFPNYVVDTGQRARMGLTGNETPALVLFDTQTK
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCCEEECCCCCCCCEEEEEECCCC
RTIPVGYGILSADEIMDRIFMLTNTKVGSDY
EEEECCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3042757; 7915817; 1593622 [H]