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The map label for this gene is traU [H]

Identifier: 148550813

GI number: 148550813

Start: 282495

End: 283517

Strand: Direct

Name: traU [H]

Synonym: Swit_5377

Alternate gene names: 148550813

Gene position: 282495-283517 (Clockwise)

Preceding gene: 148550812

Following gene: 148550814

Centisome position: 91.06

GC content: 64.61

Gene sequence:

>1023_bases
ATGACGCGCGGTCTTCGATCCCTGCTCGGCGCTCTGTCGCTTCTCGTGACGCTAATGCTTTTTGCAGCGCCAGCGCAGGC
GGCCGGACCGACCTGCAACGGCAAGTTCGTCAATCCGATCACCGACGTCTGCTGGTCGTGCCTCTTTCCCTTGTCGGTGG
GCGGCCTCAAGATCTGGCCGAGCGGCCGGCCCGATACCAGCAATCCCGCCTCGCCGGTCTGCGCCTGCGCGGATCCGTTG
CCGCGCATCGGCATTGCCGTCGGTTTCTGGGAGCCGGCTCGCCTCGCTGACGTGACGATGAAGCCGTGGTGCTTCCCCAA
CCTGGGGGGCATCCGCATCGCCCCGGGGTTCGATATCGGGCAAGGCTATCTCGCCGGTCCCTCGATGGTCGGCGGGCGGT
CGCAAAGCACGGCCAAGTGGCATGTGCACTGGTATGTCTATCCGCTGCTCTACTGGATGGAGATCCTGACCGACTTCGTC
TGCTTCGAGCAGGCGAGCTTCGACATCGCCTATATGACCGAGATCGATCCGCTCTGGCAGGACGATGCTCTCACCACGCT
GATCAACCCGGAAGCGATCATCTTCGCCAATCCGATCGCTCAGGCCGCCTGCGCGGGTGACTGCATTGCCGGCACGGTCA
ACCTACCGCTCGATCCGCTCTTCTGGTGCGCGGGCTGCCAGGGTTCGATGTACCCGCTCAACGGCAATGTCCCGGCCTCG
ATCGGCCATGTGCAGTCGTCGCGGCTGGCGGTTTCCCGCTTCGCCTACAAGATGCACCGCGAGGCGCTGGCCTGGGGGAC
GATGGGCTCGAAGGGCCTGTGCAAGAAGTACCTCATGCCGATTATGCGAAAGCAGCAATATCGCTTCCAGATGGTCAATC
CGATCCCGACGGTGAGCGGGCGGTTCGCCTGCTCCGCGATCGGGGCTTCCACGATGCCGCCCGACGCGGGTCGCGCCTAT
CCCGCCGGCGGCGAGGACATGGGCTACCTCGTCTGGCGCAAGCGCAACTGTTGTGTCCTGTAG

Upstream 100 bases:

>100_bases
CCCTCGCGCTGCTCGTCGGTACGGCGCTCTACACAGCGCTGTATCTGGCTCGCAAGCAGCGCGCTGACGCAGCCTATCTC
GATCAATTGGGAGAGCGAGA

Downstream 100 bases:

>100_bases
GGAGGGGTCGATGCGTTTCGCTGCCTGGGGCGTTGCTGCCCTGCTTGCTACCGCCGGTGTATCGGCGCTGCTCGCCCAGA
CCGTTGACGGTCTCGACGTG

Product: TraU family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MTRGLRSLLGALSLLVTLMLFAAPAQAAGPTCNGKFVNPITDVCWSCLFPLSVGGLKIWPSGRPDTSNPASPVCACADPL
PRIGIAVGFWEPARLADVTMKPWCFPNLGGIRIAPGFDIGQGYLAGPSMVGGRSQSTAKWHVHWYVYPLLYWMEILTDFV
CFEQASFDIAYMTEIDPLWQDDALTTLINPEAIIFANPIAQAACAGDCIAGTVNLPLDPLFWCAGCQGSMYPLNGNVPAS
IGHVQSSRLAVSRFAYKMHREALAWGTMGSKGLCKKYLMPIMRKQQYRFQMVNPIPTVSGRFACSAIGASTMPPDAGRAY
PAGGEDMGYLVWRKRNCCVL

Sequences:

>Translated_340_residues
MTRGLRSLLGALSLLVTLMLFAAPAQAAGPTCNGKFVNPITDVCWSCLFPLSVGGLKIWPSGRPDTSNPASPVCACADPL
PRIGIAVGFWEPARLADVTMKPWCFPNLGGIRIAPGFDIGQGYLAGPSMVGGRSQSTAKWHVHWYVYPLLYWMEILTDFV
CFEQASFDIAYMTEIDPLWQDDALTTLINPEAIIFANPIAQAACAGDCIAGTVNLPLDPLFWCAGCQGSMYPLNGNVPAS
IGHVQSSRLAVSRFAYKMHREALAWGTMGSKGLCKKYLMPIMRKQQYRFQMVNPIPTVSGRFACSAIGASTMPPDAGRAY
PAGGEDMGYLVWRKRNCCVL
>Mature_339_residues
TRGLRSLLGALSLLVTLMLFAAPAQAAGPTCNGKFVNPITDVCWSCLFPLSVGGLKIWPSGRPDTSNPASPVCACADPLP
RIGIAVGFWEPARLADVTMKPWCFPNLGGIRIAPGFDIGQGYLAGPSMVGGRSQSTAKWHVHWYVYPLLYWMEILTDFVC
FEQASFDIAYMTEIDPLWQDDALTTLINPEAIIFANPIAQAACAGDCIAGTVNLPLDPLFWCAGCQGSMYPLNGNVPASI
GHVQSSRLAVSRFAYKMHREALAWGTMGSKGLCKKYLMPIMRKQQYRFQMVNPIPTVSGRFACSAIGASTMPPDAGRAYP
AGGEDMGYLVWRKRNCCVL

Specific function: Appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments. Required for F plasmid conjugative transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009649 [H]

Pfam domain/function: PF06834 TraU [H]

EC number: NA

Molecular weight: Translated: 36886; Mature: 36755

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRGLRSLLGALSLLVTLMLFAAPAQAAGPTCNGKFVNPITDVCWSCLFPLSVGGLKIWP
CCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECC
SGRPDTSNPASPVCACADPLPRIGIAVGFWEPARLADVTMKPWCFPNLGGIRIAPGFDIG
CCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCEEECCCCCCC
QGYLAGPSMVGGRSQSTAKWHVHWYVYPLLYWMEILTDFVCFEQASFDIAYMTEIDPLWQ
CCEECCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
DDALTTLINPEAIIFANPIAQAACAGDCIAGTVNLPLDPLFWCAGCQGSMYPLNGNVPAS
CCCEEEEECCCEEEEECHHHHHHHCCCCEEEEECCCCCHHHEECCCCCCEEECCCCCCCC
IGHVQSSRLAVSRFAYKMHREALAWGTMGSKGLCKKYLMPIMRKQQYRFQMVNPIPTVSG
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
RFACSAIGASTMPPDAGRAYPAGGEDMGYLVWRKRNCCVL
CEEEHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
TRGLRSLLGALSLLVTLMLFAAPAQAAGPTCNGKFVNPITDVCWSCLFPLSVGGLKIWP
CHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECC
SGRPDTSNPASPVCACADPLPRIGIAVGFWEPARLADVTMKPWCFPNLGGIRIAPGFDIG
CCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCEEECCCCCCC
QGYLAGPSMVGGRSQSTAKWHVHWYVYPLLYWMEILTDFVCFEQASFDIAYMTEIDPLWQ
CCEECCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
DDALTTLINPEAIIFANPIAQAACAGDCIAGTVNLPLDPLFWCAGCQGSMYPLNGNVPAS
CCCEEEEECCCEEEEECHHHHHHHCCCCEEEEECCCCCHHHEECCCCCCEEECCCCCCCC
IGHVQSSRLAVSRFAYKMHREALAWGTMGSKGLCKKYLMPIMRKQQYRFQMVNPIPTVSG
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
RFACSAIGASTMPPDAGRAYPAGGEDMGYLVWRKRNCCVL
CEEEHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2198250; 7915817; 2050638; 1355084 [H]