Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550728
Identifier: 148550728
GI number: 148550728
Start: 192720
End: 193520
Strand: Direct
Name: 148550728
Synonym: Swit_5292
Alternate gene names: NA
Gene position: 192720-193520 (Clockwise)
Preceding gene: 148550726
Following gene: 148550731
Centisome position: 62.12
GC content: 62.05
Gene sequence:
>801_bases ATGACCGACATCGTCTTCGTCCACGGCATGTTCCAGAACCCCAAAAGCTGGGAAAACTGGATCCGTATGTTCATCGACAA GGGGTACAACTGCCACGCCCCGGCCTGGCCGCTGCATGAAGGTGATCCGCGCTCGCTGCGCGATAATCCGCCGCCGGGTC TGGGCGAACTTCGCCTCAAGGATGTCATCGCATCTATCGAGGCTACGGTGCATGGCCTCGACCGCCCGGTGATGATCGGC CATTCGGTGGGCGGTCTCATTACCCAGATCCTGTTGAGCCGGGGACTGCTGTCGGCTGGGGTGGCGATCGATTCCGTCGC GCCCAATGCCATGGTCGACTTCGACTGGGGCTTTCTCAAGAACAGCGCGATCATCGCCAACCCGCTGAAGGGTGACGAAC CGATCTACATGGATGCCAAGACCTTCCACGGCGCATTCGCCAACAGTTTGAGCGAAGGGGAGGCAGAGCGCGCGTTCGAA GCGACGGCGACGCATGACAGCCGCAATATCCTGCGCGACTGTATGGGAGAGGATGGCCGGATCGATCTCGACGCGCCGCA CGCGCCCCTGCTGCTGATCGGCGGTGAGGAGGACGAGATCATCCCGGCGCATCTGACCGAGAAGAATCACAGCGCCTATA AGGATGAGGGGAGCGTTGCGGAGTTCGTGTCCTTTACAGGCCGGAGCCACTTCATCTGCAACGAGCCCGGCTGGGAAGAG GTCGCGCGGACGGCGCTCCAGTTCATCGAGCGCAACGGCGTCCGTGCCGGATCTGGCGCCCGCAGCATTGAACCGATGTG A
Upstream 100 bases:
>100_bases TCATGGTTGCGCGTTCTCGTCCCTGTGCCTCGAGGCATTCGAGGAACCCATCCTGAACGGTCGCGCACCGGGAAGGCGCA GATCAGCAGGAGATTATCGC
Downstream 100 bases:
>100_bases TTTGACGGGTGAGGGGCTGTCTCGTTGAGATCGGCCCTTCTCTTGTCCGACGGTCGCGGAGGGCCGGGCGAGCCCTTCTG CCGATCATCAAGGACGATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MTDIVFVHGMFQNPKSWENWIRMFIDKGYNCHAPAWPLHEGDPRSLRDNPPPGLGELRLKDVIASIEATVHGLDRPVMIG HSVGGLITQILLSRGLLSAGVAIDSVAPNAMVDFDWGFLKNSAIIANPLKGDEPIYMDAKTFHGAFANSLSEGEAERAFE ATATHDSRNILRDCMGEDGRIDLDAPHAPLLLIGGEEDEIIPAHLTEKNHSAYKDEGSVAEFVSFTGRSHFICNEPGWEE VARTALQFIERNGVRAGSGARSIEPM
Sequences:
>Translated_266_residues MTDIVFVHGMFQNPKSWENWIRMFIDKGYNCHAPAWPLHEGDPRSLRDNPPPGLGELRLKDVIASIEATVHGLDRPVMIG HSVGGLITQILLSRGLLSAGVAIDSVAPNAMVDFDWGFLKNSAIIANPLKGDEPIYMDAKTFHGAFANSLSEGEAERAFE ATATHDSRNILRDCMGEDGRIDLDAPHAPLLLIGGEEDEIIPAHLTEKNHSAYKDEGSVAEFVSFTGRSHFICNEPGWEE VARTALQFIERNGVRAGSGARSIEPM >Mature_265_residues TDIVFVHGMFQNPKSWENWIRMFIDKGYNCHAPAWPLHEGDPRSLRDNPPPGLGELRLKDVIASIEATVHGLDRPVMIGH SVGGLITQILLSRGLLSAGVAIDSVAPNAMVDFDWGFLKNSAIIANPLKGDEPIYMDAKTFHGAFANSLSEGEAERAFEA TATHDSRNILRDCMGEDGRIDLDAPHAPLLLIGGEEDEIIPAHLTEKNHSAYKDEGSVAEFVSFTGRSHFICNEPGWEEV ARTALQFIERNGVRAGSGARSIEPM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29124; Mature: 28993
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDIVFVHGMFQNPKSWENWIRMFIDKGYNCHAPAWPLHEGDPRSLRDNPPPGLGELRLK CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH DVIASIEATVHGLDRPVMIGHSVGGLITQILLSRGLLSAGVAIDSVAPNAMVDFDWGFLK HHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCHHHHCCCHHCCCCCCEEECCCHHHC NSAIIANPLKGDEPIYMDAKTFHGAFANSLSEGEAERAFEATATHDSRNILRDCMGEDGR CCEEEECCCCCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCE IDLDAPHAPLLLIGGEEDEIIPAHLTEKNHSAYKDEGSVAEFVSFTGRSHFICNEPGWEE EEECCCCCCEEEECCCCCCEECCEECCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHH VARTALQFIERNGVRAGSGARSIEPM HHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TDIVFVHGMFQNPKSWENWIRMFIDKGYNCHAPAWPLHEGDPRSLRDNPPPGLGELRLK CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH DVIASIEATVHGLDRPVMIGHSVGGLITQILLSRGLLSAGVAIDSVAPNAMVDFDWGFLK HHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCHHHHCCCHHCCCCCCEEECCCHHHC NSAIIANPLKGDEPIYMDAKTFHGAFANSLSEGEAERAFEATATHDSRNILRDCMGEDGR CCEEEECCCCCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCE IDLDAPHAPLLLIGGEEDEIIPAHLTEKNHSAYKDEGSVAEFVSFTGRSHFICNEPGWEE EEECCCCCCEEEECCCCCCEECCEECCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHH VARTALQFIERNGVRAGSGARSIEPM HHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA