Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
---|---|
Accession | NC_009507 |
Length | 310,228 |
Click here to switch to the map view.
The map label for this gene is 148550692
Identifier: 148550692
GI number: 148550692
Start: 146592
End: 147080
Strand: Direct
Name: 148550692
Synonym: Swit_5256
Alternate gene names: NA
Gene position: 146592-147080 (Clockwise)
Preceding gene: 148550691
Following gene: 148550699
Centisome position: 47.25
GC content: 64.42
Gene sequence:
>489_bases ATGGGCATGTCCATTTTTCTCGACCGGTTCGATCTCGACATCACGCTACGGGATGCCGCGCTCGATCCCGACAATCGGCC GACGCGCCGGATGATCGCCAATGCGGCCATCGGCATGGATGCGCTCGACGCCTATTACGCCGTGCGGGAGATCCGCGAGG CGGCCCAGTGGATCCACGAGGGGCTGGCGCAAGGCAAACGGAAGCTCGCAAGCCTCCTGTCCAATCCGCAGGCCGACGAC TTTCAGCGGACGATCTATTTCTGCCTGGCGGGGCGCGGCGTGGTCGAGATGCTCGACGACCTCACCTGGTTGGAGGATTT GCTCGAGCGGCGCGGCCGGATCGCGGGCCAGATCCACCGTGAAAAGCGAACATTCCTGCCGCTGACCAACCCTTATGTCG CCGCGGAGCCCGATGGTCCCCTGGTGGAGAGTCGTGCCGATTTCGTCCAGGGTGCGTCCTGGTGGGCGGAGCCGGTCGTC AAATCCTGA
Upstream 100 bases:
>100_bases CTCGCCAATGAGGCGGACGAGGCCTGACCCAGGTCGATGCCGACCTTGTTGACCACGCCAGATGTTCACGGTACGTTCCC ACGCGAAGGGAGTTTTCGCC
Downstream 100 bases:
>100_bases ACTGCAGGGCCGTGCCGCGTGGGGCGCCGTGCCTGGTGATCGCCCTCAAGGCTCGGCGTGCAGCAGGTCTGCGGCCCATT GCTCGACCCATCCGGTCACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MGMSIFLDRFDLDITLRDAALDPDNRPTRRMIANAAIGMDALDAYYAVREIREAAQWIHEGLAQGKRKLASLLSNPQADD FQRTIYFCLAGRGVVEMLDDLTWLEDLLERRGRIAGQIHREKRTFLPLTNPYVAAEPDGPLVESRADFVQGASWWAEPVV KS
Sequences:
>Translated_162_residues MGMSIFLDRFDLDITLRDAALDPDNRPTRRMIANAAIGMDALDAYYAVREIREAAQWIHEGLAQGKRKLASLLSNPQADD FQRTIYFCLAGRGVVEMLDDLTWLEDLLERRGRIAGQIHREKRTFLPLTNPYVAAEPDGPLVESRADFVQGASWWAEPVV KS >Mature_161_residues GMSIFLDRFDLDITLRDAALDPDNRPTRRMIANAAIGMDALDAYYAVREIREAAQWIHEGLAQGKRKLASLLSNPQADDF QRTIYFCLAGRGVVEMLDDLTWLEDLLERRGRIAGQIHREKRTFLPLTNPYVAAEPDGPLVESRADFVQGASWWAEPVVK S
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18333; Mature: 18202
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMSIFLDRFDLDITLRDAALDPDNRPTRRMIANAAIGMDALDAYYAVREIREAAQWIHE CCCCCEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH GLAQGKRKLASLLSNPQADDFQRTIYFCLAGRGVVEMLDDLTWLEDLLERRGRIAGQIHR HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EKRTFLPLTNPYVAAEPDGPLVESRADFVQGASWWAEPVVKS HHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GMSIFLDRFDLDITLRDAALDPDNRPTRRMIANAAIGMDALDAYYAVREIREAAQWIHE CCCCEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH GLAQGKRKLASLLSNPQADDFQRTIYFCLAGRGVVEMLDDLTWLEDLLERRGRIAGQIHR HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EKRTFLPLTNPYVAAEPDGPLVESRADFVQGASWWAEPVVKS HHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA