Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550605
Identifier: 148550605
GI number: 148550605
Start: 60462
End: 61541
Strand: Reverse
Name: 148550605
Synonym: Swit_5166
Alternate gene names: NA
Gene position: 61541-60462 (Counterclockwise)
Preceding gene: 148550606
Following gene: 148550604
Centisome position: 19.84
GC content: 65.37
Gene sequence:
>1080_bases ATGTCCAAGTCCTTCTCGAACTTCGCCGATTTCGCCAGCTTCATCGCCAGCGAGACGGGAACCGACCAGCGTAGCCCGCT CTACGAAGCCGCCTTCATCGAGCATGACGAGCGCGCCAAGCTTTCGCCTGTCGACGAGAGCGAGCAACTGGAAATGCCCG ATCCGGAACAGAGCCGAGCCGCCGTCGAAATGGTGATGGCGACGCTCTTCGATGTGTTCCGCGACACCCGCCTCGAACCC TTCGCGAGCGATCTCGCCTGGGGCTTCGTCAACAGCTTCCATGTGGTGGCGAAGCGCATCAGCGACCGCGAGGACGATGC GGCCAAGGAGCTTGGCGAACTCGCGCGCAGCTTCGATCCCAGCGAAATCTACGCATCGCAGATCGAGGAGGCGCAGCTGC TCTGCCAGACGCTGCAGGGGTGCCGGGATGCCATGGAATGCATGCGCGACCACGCCGCCGACGTCTACCGGGTCGAGACC GGACGGCCCTATTCGCCGACGCGCGGCAGCCGGGTCTCGAAGGGCGTCACCGCCTCGATGATCGACGCCCGAGACTATCT CGCCGCCCGGATGCGGGAACGCCGTGAGCAGTTCGCTCCGGAAGGTCCGGTCGTTGCCTTCTCGGGCGGTCAGGTCTGGG AGGATCATGACATGCTCTGGAAGGGTCTGGACTCGATCCTGGCCCGCATCCCGGAGATGATCCTCGCCACGACAGCACAG ACCAAGGGCTGCGATGCCATCGCGCAGGCATGGGCAGCAGCACGCGGCGTGAAGGTCATCATGTTCCGCCTCGACCGCCG GCTGGGGGCCAAGGCCGCCTTCGTCCGCAACGATCGGCTGCTCGCCCTCAAGCCGGTCGAAGCTGTCGTCTGCGAAGGCT CCGGCATCCAGATGAACCTCGCCCAGAAGCTGCGGCAGGCAGGCGTTCCCCTCCACATCGTGAAGCTCGAACCGTCAGCC AAGCCGCAGCCCGCCCAGCCCACCGGCAGAACCGCAAAGTCGCGGGACGAATTCGATCCCTGGACCCAGGACGACTATTA CGCCGCCATGGTGAACGGCGGTGGTCGCCGTCGTCGGTGA
Upstream 100 bases:
>100_bases GCCGGCTTCCCGGTTAACGTCCCCGACCTCCCTGACCGCCGCATGTCCTGAACAAGGCCTCATCGCGTGGATGAGACATC CAAAAGCCACGGAGGCCAAC
Downstream 100 bases:
>100_bases CGCGTCCGGGAGAGGCTCCGGCAATCGCCGGGGCCTCTCCTGCTTTTTCGCTGCGAGGATGCGGTGCGCGGGGGCATCGA ACCCCCGCGCACCGCCGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MSKSFSNFADFASFIASETGTDQRSPLYEAAFIEHDERAKLSPVDESEQLEMPDPEQSRAAVEMVMATLFDVFRDTRLEP FASDLAWGFVNSFHVVAKRISDREDDAAKELGELARSFDPSEIYASQIEEAQLLCQTLQGCRDAMECMRDHAADVYRVET GRPYSPTRGSRVSKGVTASMIDARDYLAARMRERREQFAPEGPVVAFSGGQVWEDHDMLWKGLDSILARIPEMILATTAQ TKGCDAIAQAWAAARGVKVIMFRLDRRLGAKAAFVRNDRLLALKPVEAVVCEGSGIQMNLAQKLRQAGVPLHIVKLEPSA KPQPAQPTGRTAKSRDEFDPWTQDDYYAAMVNGGGRRRR
Sequences:
>Translated_359_residues MSKSFSNFADFASFIASETGTDQRSPLYEAAFIEHDERAKLSPVDESEQLEMPDPEQSRAAVEMVMATLFDVFRDTRLEP FASDLAWGFVNSFHVVAKRISDREDDAAKELGELARSFDPSEIYASQIEEAQLLCQTLQGCRDAMECMRDHAADVYRVET GRPYSPTRGSRVSKGVTASMIDARDYLAARMRERREQFAPEGPVVAFSGGQVWEDHDMLWKGLDSILARIPEMILATTAQ TKGCDAIAQAWAAARGVKVIMFRLDRRLGAKAAFVRNDRLLALKPVEAVVCEGSGIQMNLAQKLRQAGVPLHIVKLEPSA KPQPAQPTGRTAKSRDEFDPWTQDDYYAAMVNGGGRRRR >Mature_358_residues SKSFSNFADFASFIASETGTDQRSPLYEAAFIEHDERAKLSPVDESEQLEMPDPEQSRAAVEMVMATLFDVFRDTRLEPF ASDLAWGFVNSFHVVAKRISDREDDAAKELGELARSFDPSEIYASQIEEAQLLCQTLQGCRDAMECMRDHAADVYRVETG RPYSPTRGSRVSKGVTASMIDARDYLAARMRERREQFAPEGPVVAFSGGQVWEDHDMLWKGLDSILARIPEMILATTAQT KGCDAIAQAWAAARGVKVIMFRLDRRLGAKAAFVRNDRLLALKPVEAVVCEGSGIQMNLAQKLRQAGVPLHIVKLEPSAK PQPAQPTGRTAKSRDEFDPWTQDDYYAAMVNGGGRRRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40017; Mature: 39885
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSFSNFADFASFIASETGTDQRSPLYEAAFIEHDERAKLSPVDESEQLEMPDPEQSRA CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH AVEMVMATLFDVFRDTRLEPFASDLAWGFVNSFHVVAKRISDREDDAAKELGELARSFDP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH SEIYASQIEEAQLLCQTLQGCRDAMECMRDHAADVYRVETGRPYSPTRGSRVSKGVTASM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHCCCHHHH IDARDYLAARMRERREQFAPEGPVVAFSGGQVWEDHDMLWKGLDSILARIPEMILATTAQ HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC TKGCDAIAQAWAAARGVKVIMFRLDRRLGAKAAFVRNDRLLALKPVEAVVCEGSGIQMNL CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHEEEECCCEEEECCHHHEEECCCCCEEHH AQKLRQAGVPLHIVKLEPSAKPQPAQPTGRTAKSRDEFDPWTQDDYYAAMVNGGGRRRR HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC >Mature Secondary Structure SKSFSNFADFASFIASETGTDQRSPLYEAAFIEHDERAKLSPVDESEQLEMPDPEQSRA CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH AVEMVMATLFDVFRDTRLEPFASDLAWGFVNSFHVVAKRISDREDDAAKELGELARSFDP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH SEIYASQIEEAQLLCQTLQGCRDAMECMRDHAADVYRVETGRPYSPTRGSRVSKGVTASM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHCCCHHHH IDARDYLAARMRERREQFAPEGPVVAFSGGQVWEDHDMLWKGLDSILARIPEMILATTAQ HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC TKGCDAIAQAWAAARGVKVIMFRLDRRLGAKAAFVRNDRLLALKPVEAVVCEGSGIQMNL CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHEEEECCCEEEECCHHHEEECCCCCEEHH AQKLRQAGVPLHIVKLEPSAKPQPAQPTGRTAKSRDEFDPWTQDDYYAAMVNGGGRRRR HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA