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The map label for this gene is hup [H]

Identifier: 148550580

GI number: 148550580

Start: 35066

End: 35344

Strand: Reverse

Name: hup [H]

Synonym: Swit_5141

Alternate gene names: 148550580

Gene position: 35344-35066 (Counterclockwise)

Preceding gene: 148550581

Following gene: 148550579

Centisome position: 11.39

GC content: 61.29

Gene sequence:

>279_bases
ATGATGAACAATAGCGACCTTGCCGATCATCTCGCCGGTGCGACCGGGGCCACCAAGGCTGATGCCCGCAAGGCGGTCGA
TCTCGTCTTCGCCGCAATAGCTGACGCCGCCGCCAAAGGCGAAGAGGTGAGCCTCAACGGCTTCGGCAAGTTCAAGGTCA
AGGACGTTCTCGCCCGCGAAGGCCGGAACCCGGCCACCGGCGAAACCATCAAGATCGCAGCGTCGAAAAAACTCTCCTTC
AGCGTGGCGAAGGCCGTCAAGGACCGGCTCAACAGCTAA

Upstream 100 bases:

>100_bases
CCAATAAGCCGGAATCCTTCAATAAGGTCGAGCATTGAGATAGCGCCGCACGCTCCTCGCCACTATTAGAGGAATCCCGA
AAAATTGCAGAAGGAACAGC

Downstream 100 bases:

>100_bases
AGCGGGCTTGACGCCTCGATACCAAGAGATCGAGGCGTCCCCCTTCCCCGCAAGAGGCTTCCCGCAAGACCGCCACTCGC
GGCTTTAATGATCGAACGAC

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: DNA-binding protein II; HB [H]

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MMNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREGRNPATGETIKIAASKKLSF
SVAKAVKDRLNS

Sequences:

>Translated_92_residues
MMNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREGRNPATGETIKIAASKKLSF
SVAKAVKDRLNS
>Mature_92_residues
MMNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREGRNPATGETIKIAASKKLSF
SVAKAVKDRLNS

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=45.5555555555556, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=36.2637362637363, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI1790433, Length=87, Percent_Identity=42.5287356321839, Blast_Score=65, Evalue=9e-13,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 9533; Mature: 9533

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLARE
CCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHC
GRNPATGETIKIAASKKLSFSVAKAVKDRLNS
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLARE
CCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHC
GRNPATGETIKIAASKKLSFSVAKAVKDRLNS
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1644313 [H]