Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is qheDH [H]
Identifier: 148550575
GI number: 148550575
Start: 27643
End: 29772
Strand: Reverse
Name: qheDH [H]
Synonym: Swit_5136
Alternate gene names: 148550575
Gene position: 29772-27643 (Counterclockwise)
Preceding gene: 148550576
Following gene: 148550574
Centisome position: 9.6
GC content: 60.19
Gene sequence:
>2130_bases ATGGCCCTTGTGGGGGCGGGCTTCCTCTTGCTGGGTACGACACTGAGTGGTTGCTCGCGGTCGAACGAAGCGAGCAACCG GGCACCCGTCGATACCTCGAAAATCGCCGGGAAAATTAACGGTGACTTTATTGTCAAGAACGCTGCGACTTCCGAGGAAT GGCCCAGCTACGGCCTCGACTATTCGGAAACGCGCTTCAGCAAGCTGTCCCAGATATCCACTGACAATGTCGCCCGACTG GGTTTGGCCTGGACCTATGATCTGGGCTCGACCCGCGGCGTAGAGGCAACGCCGCTTGTTGTGGACGGGATCATGTACGT GACAGCATCCTGGAGCGTCGTGCATGCAATCAATGTACGGACGGGGAAGCAGTTGTGGACGTTCGATCCGCAAGTGCCGC GCAGCGCGGGCGGCAAGGGGTGCTGTGACGTCGTGAACCGGGGCGTGGCCGTCTATGAGGGAAAAGTCTTCGTCGGAGCC TTCGATGGTCGTCTCATCGCGCTTGATGCGGCGTCCGGCGCCAAATTGTGGGAAGAGGACACCAGACTATCGCCGGACTC GCCAGCCACCATCACCGGCGCGCCGCGTGTGTACAAGGGCAAGGTCATCATTGGTAACGGTGGCGCGGAGCTGGGGTTGC GTGGCTATATCACCGCCTATGATGCGTCGTCGGGCAAGAAGCTCTGGCGCTGGTTCACGGTCCCGGGAGATCCATCGAAG CCGTTTGAGAACAAGGCGATGGAAGCCGCCGCCAAGACCTGGGACCCCAGCGGACGCTATTGGGAGGCGGGCGGTGGCGG CACCGTCTGGAACAGCATGGCGTTCGATCCGCAGCTCAATCTCATGTATATCGGCGTCGGAAACGGGGCGCCTTGGTCGC GCAATCGCCGCAGTCCCAAGGGCGGCGACAATCTCTATCTCGGATCGATCGTCGCGCTCAATCCTGATACCGGCGAATAT GTCTGGCACTATCAGGAGACGCCGGGGGACAACTGGGATTACACGTCGACGCAGGATATGATCCTGGCCGACATGACGGT CGACGGCGCGCCGCGCAAAGTGATCCTGCATGCGCCCAAGAACGGCTTCTTCTTCGTCATCGATCGGACAAACGGCAAAT TCATCTCCGCGAAGAATTTCGTGCCGGTGAACTGGGCCTCGGGCTATGACAAGGCGGGCAGGCCTATCGAATTGCCCGGC GTCCGCTCGGCCACGCCCTATGAGATCATTCCCGGTCCTTTTGGCGGGCACAACTGGCATTCCATGTCGTTCAATCCGGC TTTGGGGCTGGCGTTCATTCCCGCGCAGCATGTGCCGCTTTCGCTGGCGGACGATCCGAAATGGAAATATCGCTCCAACA TTCCAGGCCAGCCCATGAGCGGCATCGGTTGGAACACAGGCAGTTTGCTGGGAGGCGCGGCGACGAAGGCCAAACCCTTC GGTCGCCTGATCGCATGGGACCCGGTGCGCCAGAAGCAAGTCTGGAGTCAGGAACAAGTTTCGCCGTGGAATGGTGGCAC GCTGACCACAGCGGGGAATCTGGTGTTCCAAGGAACCGCAGATGGGCATTTCGTAGCCTATGATGCGCGCAACGGCCATA AAATGTGGGAGTCGCCGGTAGGCAGTGGCGTCATCGCGGCTCCGATCACCTACCAGATCGATGGCAAGCAGTATGTCTCG ATTGCGGTGGGTTGGGGCGGTGTTTTCGGTGAGTCCCAGCGCGCTACCGACCGCAGTTCGCCTGGTACGGTCTACACCTT CGTCATCGGCGGCAAGGCGCCGTTGCCGCAGTTCGGAAAATATGAGCAGGGGGAACTGCTCTCGGGCGTGCCCTATGACA AGAAGGACGTCGCTCCTGGAGGCGCACTCTACGTCAGCAACTGTCTGTTCTGCCATGGCGTTCCTGGCGTCGACAAGGGA GGCAATTTGCCCAACCTGGGTTATGCGCCCCGCGAGGCGATCGCCAATCTTGAAGCGTTCGTTTTCGAAGGTGCGATGGC CGAGCAGGGTATGCCCGATTTCAAGGGCAAGCTTACCGCAGAGGACGTCAAGAAGCTCAAGGCGTTCATTCAAGGCACTG CAGATTCTGTGCGCGGACAACCTGCCGCGAGCGCAAAACCGAAAAAATAG
Upstream 100 bases:
>100_bases GAACCGCCTCAATTTGCGTCTTCTGAAGGTCTTCTAAGTATTTGAGAGAAAGAACAAAGACATGTCGATCATCTTTTTCG GGCGGGGAAAGCCGGGGCGA
Downstream 100 bases:
>100_bases GCTCGCTTAGAGAGGATGACCGGCGGTTTCGGCGCCCGCCGCCGGTCATCCGATCCTTTGTGAAAAGGCGGCGACAAACG CTTGCGCCGGTCAGGACTGA
Product: Pyrrolo-quinoline quinone
Products: NA
Alternate protein names: QH-EDH1; Quinohaemoprotein ethanol dehydrogenase type I [H]
Number of amino acids: Translated: 709; Mature: 708
Protein sequence:
>709_residues MALVGAGFLLLGTTLSGCSRSNEASNRAPVDTSKIAGKINGDFIVKNAATSEEWPSYGLDYSETRFSKLSQISTDNVARL GLAWTYDLGSTRGVEATPLVVDGIMYVTASWSVVHAINVRTGKQLWTFDPQVPRSAGGKGCCDVVNRGVAVYEGKVFVGA FDGRLIALDAASGAKLWEEDTRLSPDSPATITGAPRVYKGKVIIGNGGAELGLRGYITAYDASSGKKLWRWFTVPGDPSK PFENKAMEAAAKTWDPSGRYWEAGGGGTVWNSMAFDPQLNLMYIGVGNGAPWSRNRRSPKGGDNLYLGSIVALNPDTGEY VWHYQETPGDNWDYTSTQDMILADMTVDGAPRKVILHAPKNGFFFVIDRTNGKFISAKNFVPVNWASGYDKAGRPIELPG VRSATPYEIIPGPFGGHNWHSMSFNPALGLAFIPAQHVPLSLADDPKWKYRSNIPGQPMSGIGWNTGSLLGGAATKAKPF GRLIAWDPVRQKQVWSQEQVSPWNGGTLTTAGNLVFQGTADGHFVAYDARNGHKMWESPVGSGVIAAPITYQIDGKQYVS IAVGWGGVFGESQRATDRSSPGTVYTFVIGGKAPLPQFGKYEQGELLSGVPYDKKDVAPGGALYVSNCLFCHGVPGVDKG GNLPNLGYAPREAIANLEAFVFEGAMAEQGMPDFKGKLTAEDVKKLKAFIQGTADSVRGQPAASAKPKK
Sequences:
>Translated_709_residues MALVGAGFLLLGTTLSGCSRSNEASNRAPVDTSKIAGKINGDFIVKNAATSEEWPSYGLDYSETRFSKLSQISTDNVARL GLAWTYDLGSTRGVEATPLVVDGIMYVTASWSVVHAINVRTGKQLWTFDPQVPRSAGGKGCCDVVNRGVAVYEGKVFVGA FDGRLIALDAASGAKLWEEDTRLSPDSPATITGAPRVYKGKVIIGNGGAELGLRGYITAYDASSGKKLWRWFTVPGDPSK PFENKAMEAAAKTWDPSGRYWEAGGGGTVWNSMAFDPQLNLMYIGVGNGAPWSRNRRSPKGGDNLYLGSIVALNPDTGEY VWHYQETPGDNWDYTSTQDMILADMTVDGAPRKVILHAPKNGFFFVIDRTNGKFISAKNFVPVNWASGYDKAGRPIELPG VRSATPYEIIPGPFGGHNWHSMSFNPALGLAFIPAQHVPLSLADDPKWKYRSNIPGQPMSGIGWNTGSLLGGAATKAKPF GRLIAWDPVRQKQVWSQEQVSPWNGGTLTTAGNLVFQGTADGHFVAYDARNGHKMWESPVGSGVIAAPITYQIDGKQYVS IAVGWGGVFGESQRATDRSSPGTVYTFVIGGKAPLPQFGKYEQGELLSGVPYDKKDVAPGGALYVSNCLFCHGVPGVDKG GNLPNLGYAPREAIANLEAFVFEGAMAEQGMPDFKGKLTAEDVKKLKAFIQGTADSVRGQPAASAKPKK >Mature_708_residues ALVGAGFLLLGTTLSGCSRSNEASNRAPVDTSKIAGKINGDFIVKNAATSEEWPSYGLDYSETRFSKLSQISTDNVARLG LAWTYDLGSTRGVEATPLVVDGIMYVTASWSVVHAINVRTGKQLWTFDPQVPRSAGGKGCCDVVNRGVAVYEGKVFVGAF DGRLIALDAASGAKLWEEDTRLSPDSPATITGAPRVYKGKVIIGNGGAELGLRGYITAYDASSGKKLWRWFTVPGDPSKP FENKAMEAAAKTWDPSGRYWEAGGGGTVWNSMAFDPQLNLMYIGVGNGAPWSRNRRSPKGGDNLYLGSIVALNPDTGEYV WHYQETPGDNWDYTSTQDMILADMTVDGAPRKVILHAPKNGFFFVIDRTNGKFISAKNFVPVNWASGYDKAGRPIELPGV RSATPYEIIPGPFGGHNWHSMSFNPALGLAFIPAQHVPLSLADDPKWKYRSNIPGQPMSGIGWNTGSLLGGAATKAKPFG RLIAWDPVRQKQVWSQEQVSPWNGGTLTTAGNLVFQGTADGHFVAYDARNGHKMWESPVGSGVIAAPITYQIDGKQYVSI AVGWGGVFGESQRATDRSSPGTVYTFVIGGKAPLPQFGKYEQGELLSGVPYDKKDVAPGGALYVSNCLFCHGVPGVDKGG NLPNLGYAPREAIANLEAFVFEGAMAEQGMPDFKGKLTAEDVKKLKAFIQGTADSVRGQPAASAKPKK
Specific function: Catalyzes the dye-linked oxidation of primary alcohols to the corresponding aldehydes and the (subsequent) oxidation of the aldehydes to carboxylic acids [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=667, Percent_Identity=26.5367316341829, Blast_Score=170, Evalue=3e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR017512 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.98.1 [H]
Molecular weight: Translated: 75947; Mature: 75816
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: PS00364 BACTERIAL_PQQ_2 ; PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALVGAGFLLLGTTLSGCSRSNEASNRAPVDTSKIAGKINGDFIVKNAATSEEWPSYGLD CEEEECCCEEECCHHHCCCCCCCCCCCCCCCHHHHCEECCCCEEEECCCCCCCCCCCCCC YSETRFSKLSQISTDNVARLGLAWTYDLGSTRGVEATPLVVDGIMYVTASWSVVHAINVR CCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCEEECCEEEEEECCEEEEEEEEC TGKQLWTFDPQVPRSAGGKGCCDVVNRGVAVYEGKVFVGAFDGRLIALDAASGAKLWEED CCCEEEEECCCCCCCCCCCCHHHHHHCCEEEEECEEEEEEECCEEEEEECCCCCCHHHHH TRLSPDSPATITGAPRVYKGKVIIGNGGAELGLRGYITAYDASSGKKLWRWFTVPGDPSK CCCCCCCCEEEECCCCEEECEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCC PFENKAMEAAAKTWDPSGRYWEAGGGGTVWNSMAFDPQLNLMYIGVGNGAPWSRNRRSPK CHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCC GGDNLYLGSIVALNPDTGEYVWHYQETPGDNWDYTSTQDMILADMTVDGAPRKVILHAPK CCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCC NGFFFVIDRTNGKFISAKNFVPVNWASGYDKAGRPIELPGVRSATPYEIIPGPFGGHNWH CCEEEEEECCCCCEEECCCEEEECCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCC SMSFNPALGLAFIPAQHVPLSLADDPKWKYRSNIPGQPMSGIGWNTGSLLGGAATKAKPF CEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRLIAWDPVRQKQVWSQEQVSPWNGGTLTTAGNLVFQGTADGHFVAYDARNGHKMWESPV CCEEEECCCHHHHHCCHHCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCHHHCCCC GSGVIAAPITYQIDGKQYVSIAVGWGGVFGESQRATDRSSPGTVYTFVIGGKAPLPQFGK CCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC YEQGELLSGVPYDKKDVAPGGALYVSNCLFCHGVPGVDKGGNLPNLGYAPREAIANLEAF CCCCCCCCCCCCCHHHCCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCHHHHHHCCHHE VFEGAMAEQGMPDFKGKLTAEDVKKLKAFIQGTADSVRGQPAASAKPKK EECCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC >Mature Secondary Structure ALVGAGFLLLGTTLSGCSRSNEASNRAPVDTSKIAGKINGDFIVKNAATSEEWPSYGLD EEEECCCEEECCHHHCCCCCCCCCCCCCCCHHHHCEECCCCEEEECCCCCCCCCCCCCC YSETRFSKLSQISTDNVARLGLAWTYDLGSTRGVEATPLVVDGIMYVTASWSVVHAINVR CCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCEEECCEEEEEECCEEEEEEEEC TGKQLWTFDPQVPRSAGGKGCCDVVNRGVAVYEGKVFVGAFDGRLIALDAASGAKLWEED CCCEEEEECCCCCCCCCCCCHHHHHHCCEEEEECEEEEEEECCEEEEEECCCCCCHHHHH TRLSPDSPATITGAPRVYKGKVIIGNGGAELGLRGYITAYDASSGKKLWRWFTVPGDPSK CCCCCCCCEEEECCCCEEECEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCC PFENKAMEAAAKTWDPSGRYWEAGGGGTVWNSMAFDPQLNLMYIGVGNGAPWSRNRRSPK CHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCC GGDNLYLGSIVALNPDTGEYVWHYQETPGDNWDYTSTQDMILADMTVDGAPRKVILHAPK CCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCC NGFFFVIDRTNGKFISAKNFVPVNWASGYDKAGRPIELPGVRSATPYEIIPGPFGGHNWH CCEEEEEECCCCCEEECCCEEEECCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCC SMSFNPALGLAFIPAQHVPLSLADDPKWKYRSNIPGQPMSGIGWNTGSLLGGAATKAKPF CEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRLIAWDPVRQKQVWSQEQVSPWNGGTLTTAGNLVFQGTADGHFVAYDARNGHKMWESPV CCEEEECCCHHHHHCCHHCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCHHHCCCC GSGVIAAPITYQIDGKQYVSIAVGWGGVFGESQRATDRSSPGTVYTFVIGGKAPLPQFGK CCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC YEQGELLSGVPYDKKDVAPGGALYVSNCLFCHGVPGVDKGGNLPNLGYAPREAIANLEAF CCCCCCCCCCCCCHHHCCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCHHHHHHCCHHE VFEGAMAEQGMPDFKGKLTAEDVKKLKAFIQGTADSVRGQPAASAKPKK EECCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8654419; 7601151; 3521592; 11679760; 11714714 [H]