Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 148379487

GI number: 148379487

Start: 1651422

End: 1652783

Strand: Direct

Name: ugpB [H]

Synonym: CBO1518

Alternate gene names: 148379487

Gene position: 1651422-1652783 (Clockwise)

Preceding gene: 148379486

Following gene: 148379489

Centisome position: 42.49

GC content: 30.69

Gene sequence:

>1362_bases
ATGAAATTTAAAAAATTAACAGCTCTTATTACAGCATTTACATTAACCTTTGGGTTAGCAGCCTGTGGTAGCAATAAGGA
AGATGTATCAAAAAAGGAGGAGTCAAAAGCTACAATAGCCACAGAGATAAAAGAGCCTGTTACTATTGAATTTTGGCATG
CTATGAATGGTGATAATGAAGCTGCTCTAAAGGAGATAACAGAGGAATTCAACAAAAAAAATAAAGATAAGATAACAGTA
AAATTAGTATATCAAGGTCAGTATAAAGAATTATTTTCAAAGTTAGATGGTGCTGCTAAATCTAAAAAATTACCAGCATT
AACTATGATATATCCAAATAGATTAACAGCTTATGTTATGAATGATTTAGTAGAAAATCTAAATCCTTATATTGAAAATG
AAAAAATAGGATTTAAAAAGGATGTATGGGATGATATTCCTGAATTTGTAAGAGATAATGGTATGTGGAATGATAAGCAT
TATTCACTCCCATTTAATAAAGGTACATATCTTCTTTTCTACAATGAGGATTTACTAAAAAAATATAATGTAAAAGTTCC
AAACAATTGGAATGAATTAAAAGAAGCTTCTAAAAAATTAACTGTAGATACTAATGGAGATGGAAAAAATGATATATATG
GTCTAGGATTAAATTCATCCGTAGGAATAGATTCAAGTTTTTGGGTAGAACAAGCAGGTGGACATTTAATAGATGAAGCC
AATGATAAACTTCTTTTCAATTCAAAAGAGGGAGCAGAAGCCTTTGACTTTTTATCAGAATTAGTTAAATCAGGTAATGC
TAAAATATCCACTGAAGAAAAATACATGACTGGTGCTTTTAGTAGGGGAGAAGCAGCTATGGGAATTTCTTCAATATCAG
CCTTGCCAGATATAATAAAGGCTTGTAAAGGAAACAATATAAACTTTAAAACTGCAGTGCTACCAGAAGGAAAGAAAAAA
GCAGCATTATTTTCAGGTACAGATGTAGCAATATTTAATACTCCTTCACCAGAAGAGAAATTAGCAGCCTTTGAATATTT
AAAATTCTTTATGGAAAAAGAAAGTCAAACAAAGTGGGCTACTAAATCAGGTTATTTACCACTTAGAAAATCTGTTATAG
ATTCAAAAGAATTTAAAGATTATGTAGAAAAAGAAAATCCAGCAAAGGGAGAAGCCGTTAAAGAATTTGATTATGGCTAC
TGTGATCCTAAAGTATTGAATGGATATGCTATACATGATAATATGGCTAAAGCCTTAGATCAGATAATAGCTGGAAAGAA
AGATTCAAAACAAGCTCTAAGTGATGCAGAAAAGAAAGCAAGACAAGAGTTAGATGAAGCTAAAAAAGCTTTTGGAAAGT
AG

Upstream 100 bases:

>100_bases
TGTATTACAAAAATATATAATATCTGGTATGACCAAATCTGGAATAAAGGGATAATTTGTTTTTAAATAAATTTAATATA
AATAAGTTGGAGGGGATAAA

Downstream 100 bases:

>100_bases
ACATAAAAATTAATAGTTATAGTACTTATTTTAGATAATATAAAAGAATAAAGATTTTATAATAAGAGATTCTAAATTCT
AAAAATTTACCCTATAGAGT

Product: carbohydrate uptake ABC transporter, CUT1 family, carbohydrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MKFKKLTALITAFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNEAALKEITEEFNKKNKDKITV
KLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVMNDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKH
YSLPFNKGTYLLFYNEDLLKKYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIIKACKGNNINFKTAVLPEGKKK
AALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWATKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGY
CDPKVLNGYAIHDNMAKALDQIIAGKKDSKQALSDAEKKARQELDEAKKAFGK

Sequences:

>Translated_453_residues
MKFKKLTALITAFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNEAALKEITEEFNKKNKDKITV
KLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVMNDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKH
YSLPFNKGTYLLFYNEDLLKKYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIIKACKGNNINFKTAVLPEGKKK
AALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWATKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGY
CDPKVLNGYAIHDNMAKALDQIIAGKKDSKQALSDAEKKARQELDEAKKAFGK
>Mature_453_residues
MKFKKLTALITAFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNEAALKEITEEFNKKNKDKITV
KLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVMNDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKH
YSLPFNKGTYLLFYNEDLLKKYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIIKACKGNNINFKTAVLPEGKKK
AALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWATKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGY
CDPKVLNGYAIHDNMAKALDQIIAGKKDSKQALSDAEKKARQELDEAKKAFGK

Specific function: Part of the ABC transporter complex ugpABCE involved in sn-glycerol-3-phosphate import [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=426, Percent_Identity=23.7089201877934, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1787569, Length=355, Percent_Identity=25.6338028169014, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 50745; Mature: 50745

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKKLTALITAFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
AALKEITEEFNKKNKDKITVKLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVM
HHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCHHHHCCCCEEEEECCCHHHHHHH
NDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKHYSLPFNKGTYLLFYNEDLLK
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECHHHHH
KYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
HCCCCCCCCHHHHHHHHHEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCEECCC
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIIK
CCCEEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ACKGNNINFKTAVLPEGKKKAALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWA
HHCCCCCCEEEEECCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
TKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGYCDPKVLNGYAIHDNMAKALD
CCCCCCHHHHHHHCHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHCCEEEHHHHHHHHH
QIIAGKKDSKQALSDAEKKARQELDEAKKAFGK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFKKLTALITAFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
AALKEITEEFNKKNKDKITVKLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVM
HHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCHHHHCCCCEEEEECCCHHHHHHH
NDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKHYSLPFNKGTYLLFYNEDLLK
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECHHHHH
KYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
HCCCCCCCCHHHHHHHHHEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCEECCC
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIIK
CCCEEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ACKGNNINFKTAVLPEGKKKAALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWA
HHCCCCCCEEEEECCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
TKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGYCDPKVLNGYAIHDNMAKALD
CCCCCCHHHHHHHCHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHCCEEEHHHHHHHHH
QIIAGKKDSKQALSDAEKKARQELDEAKKAFGK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA