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The map label for this gene is ycbZ [H]

Identifier: 148379413

GI number: 148379413

Start: 1565383

End: 1567701

Strand: Direct

Name: ycbZ [H]

Synonym: CBO1439

Alternate gene names: 148379413

Gene position: 1565383-1567701 (Clockwise)

Preceding gene: 148379412

Following gene: 148379422

Centisome position: 40.27

GC content: 26.35

Gene sequence:

>2319_bases
ATGTTAAGAAAAATAGAGTCAAAAGATTTATTATATAATTTGGAACTCGATGATATTAATATAGATAGAACCCAAAAGTA
TACTCCGGAATATAACTCTATATATGAAAAGATAAATCTTGCTTTGGATATAGATAAATCAGGATACAATTTATACTTAG
TAGATGATTTTTCTAAAGAAAAATTAAATAGTATAATAAATTTTATAAATCAAAAACTAGAGAAAAAAAGTAAACCAAAG
GATATTTGCTATGTAGTTTTAGAGGAAGAAAGATACCCTTATAGTATATATTTAGAAAATGGGAAAGGTAAAATATTAAA
AGAAAAATTAAAAGATATTCAAACAAAATATAATGAATGTATATATGATTTTTATAACAAATCTTCCAATAAAGAAAAAG
AAATTATTTTAGAGAGTATGGAGAAAAAAAGGAGTGAAATAGTAAACGAACTTATAGAGGAGTCAAAAAAAGAAGGTTTT
GAAATAAAAACTGGTGTATCTGGCTTTGTCTTCATGCCTATAAAGGATGGTAATTCTCTAAGTGAAAGTGAATATGAAGA
CTTGAATAAAGAAGACAAAGAAGAGATATTAGAAAAAGTATCTAAATTAAAGGAAAAGGCAGAATCTTCTTTAGAAGTAT
TAGCTGATATGGAAAGAGAAGGATTAGAAAAATTAAAGGATATAATGAGAACTTATTTGGAAATGGAAATGAAAGGTTCA
AAGGAAGAATATAGAATGGAGTTTGAAGATAACATTCAGACTCTAGATTTTTTAAATAGTGTTTGCAGAAATATAGAAAA
GGAATTAATAGAAAGTTACACTTCAAGCTATGAAGAAGATCAAGAATCTATAATAAACGTTATATATAAATATAAAGTAA
ATGTAATAGTAGACAATACTTTAAACAAAAGTCCTTTAGTTATATTTGAAGAAAATCCCTCAGTAAATAATTTAGTTGGA
AGCATAGAATACGAAAATAAAAGTGGAGTATATTATACAGATGCTAGTTTAATTAAAGCCGGATCACTTTTAAAAGCTAA
TGAGGGCTGCTTAATTGTGAGAGCTAACAGTTTGTTTACAAATGGCTCAGCTTATTTTTATTTAAAAAAAGCTCTCATAA
ATGATAAGATAGATTTTGATTATAATAAGGGATATCTAGAACTATTATCTTTGGGAGGATTAAAGCCGGAGCCAATAAAC
ACTAAATTAAAGGTAATAATTATAGGTGATTATGAAACTTACAATTTGCTTTACAATTATGATGAAGATTTTAAAAAGAT
ATTTAAGCTAAAATCAGAATATAATAAAGTAGTGGATATAAATAGTAAGAGTAAAGAACAGATTTGTAAAAATATATATG
ATATATGTGAAAATAAAGATTTAAAAAATATAAATGAAGAGGCAGTAAAAGAAGTATGCAAATATTTATCAAGAAAAGCT
GAAAATAAAAATAAATTTTATTTTGATAATTATGAAATAGATAGATTATTAATACAAGCGGATAGTAAAGCTAGGATTGA
AGATAGAGACATTATAACAAAAGAAGATATTCAATTTGTAGCTTATGAAAAAGAGGAAATAGAAAAAGAAGTTATGGAAG
GTTATGAAAAAGAAAGAATATTTATAGATGTAAAGGGAGATAAAGTTGGTCAAGTAAATGGACTATCTGTAATAGATTTA
GGATATGCAAGTTTTGGGAGGCCTATTAGAATAACTTGTTGCTGTTATAAGGGCAATGGAGATATTATAGATATCCAAAA
GGAGAGTAATTTAAGTGGGAATATACACAATAAAGCTATAAGCACATTAAAGGGGTATATAAATAGTATAATAGGGAAAT
ATGATACGTTGCCAGTAGATTTCCATTTAAGTTTTGAACAGATATATGGAACAGTGGATGGAGATAGCGCTTCTGTAGCG
GAGGCCATAGCTATGTTATCTGCTTTAAGTAATATACCTGTTAGACAAAGTATAGCAGTTACAGGATCAATAAATCAGTT
TGGTCAGGTTCAGCCTATAGGTGGTGTAAATGAAAAAATAGAAGGATTTTATGAGGTATGTAGATATAAAAAAGATATAA
AGGATAAGGGGATATTAATACCAAAATCAAATAAAGAAAACTTAGTGTTAAATAAAGAAGTAGAAGAGGCTATTAAAAAC
GGAGAGTTTAGTATATATACTATGGAAACTTTGGAGGATGCAGTAAAAATACTCCTAGGAGAAAAAAATTTAAAATTTAA
TGAATTAATAGTGGAGATAGAAAAAGAACTGAAAAAGTATAATAAGAAATCTAAAAAATGCAGAAAAATAAAATTATGA

Upstream 100 bases:

>100_bases
TAATTTTATATTTTTTATTATGAAAATATAAACCTCTTTAGTTACTAAAATAAACCTTAATGAATATTAATATATTAACG
GCTAAAAGGGGGAGTGAAAC

Downstream 100 bases:

>100_bases
AAAATTATAAATAGATTATAATTAATATAAATGAATTTAAATAAGATGACTTTTGTTTAGTGAAAAAGTCATCTTATTGA
TTCCAAAAACCGGGTATATA

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFIDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL

Sequences:

>Translated_772_residues
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFIDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
>Mature_772_residues
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFIDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=448, Percent_Identity=29.0178571428571, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI1786643, Length=170, Percent_Identity=28.2352941176471, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17556486, Length=198, Percent_Identity=29.7979797979798, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 89193; Mature: 89193

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKE
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCCHH
KLNSIINFINQKLEKKSKPKDICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNEC
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
IYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGFEIKTGVSGFVFMPIKDGNSL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCC
SESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNT
HHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC
LNKSPLVIFEENPSVNNLVGSIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFT
CCCCCEEEECCCCCCCCEEEEEEECCCCCEEEECHHHHHCCCCEECCCCEEEEEECCEEE
NGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPINTKLKVIIIGDYETYNLLYNY
CCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEECC
DEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
CHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERI
CCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEE
FIDVKGDKVGQVNGLSVIDLGYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAI
EEEECCCCCCCCCCEEEEEECHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHH
STLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVAEAIAMLSALSNIPVRQSIAV
HHHHHHHHHHHCCCCCCEEEEEEEHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
TGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECHHHHHHHHC
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
CCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKE
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCCHH
KLNSIINFINQKLEKKSKPKDICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNEC
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
IYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGFEIKTGVSGFVFMPIKDGNSL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCC
SESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNT
HHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC
LNKSPLVIFEENPSVNNLVGSIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFT
CCCCCEEEECCCCCCCCEEEEEEECCCCCEEEECHHHHHCCCCEECCCCEEEEEECCEEE
NGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPINTKLKVIIIGDYETYNLLYNY
CCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEECC
DEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
CHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERI
CCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEE
FIDVKGDKVGQVNGLSVIDLGYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAI
EEEECCCCCCCCCCEEEEEECHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHH
STLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVAEAIAMLSALSNIPVRQSIAV
HHHHHHHHHHHCCCCCCEEEEEEEHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
TGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECHHHHHHHHC
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
CCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]