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The map label for this gene is cecB [H]

Identifier: 148360313

GI number: 148360313

Start: 1235178

End: 1236149

Strand: Direct

Name: cecB [H]

Synonym: LPC_2250

Alternate gene names: 148360313

Gene position: 1235178-1236149 (Clockwise)

Preceding gene: 148360314

Following gene: 148360312

Centisome position: 34.54

GC content: 45.06

Gene sequence:

>972_bases
ATGAGATGGTGGCAGCAAATGAGAAGGATGGCATTAATTAGTCTGTTTCTTAGTTTACTCTTTCCTATTCAAGGGTGCTT
TGCCCATGGAGAAGAAATTGAAGTGAGTGAAGGAGGCGCCAAAGGGCCAGTTCATTTAACACCCGCACAAACTAAAATGC
TTGACATCAAGGTGGTGGAAGCAACCAATCGCCCCATGGCGCAAATGCTTGGTTTAAATGGCCAAATTCAATTGTTACCT
GATGCGCAAGCCGATGTCAGCATTCGGATTAGTGGGAGTGTGACCGCCATTGATGTGAATTTAGGGGATAGCGTCAAGGC
AGGACAGCGTCTAGCCACAGTGCAATCACGATTAGTGGGTAATCCTCCACCAAGTGTCGCCGTCACAGCTCCCATTGCAG
GCATCATTGATGCCAGGAATATCAATTTGGGCCAAGCGGTTGAGCCGAACACCGTTCTTTTTCACATCAGCAATCGCGAT
AAATTATTAGTCGTCGCTCAAGTGTATGAAGAAGATTTAGGCAAGATTAAAGTAGGGCAAAAAGTAAACATTCATGCTTT
AAGTTACCCAAAGAAGGTTTTTGCAGGCCAAGTGACTTTAATTGAACCCAATCTTGATCCATTAACCCGTACCGTCAATG
TGCGAATTACTTTGGACAATAAGGAGGGACTTCTCAAGACTGGGATGTTTGTGCGGGCTAATGTGATTTTAGCGCGTAAT
GAGGCAGCACTTGCCATACCTAACGCTGCTCTTTTACAGGCGGATAATGAGCAATTTGTTTTTGTGCAAAATGGGGATAC
TTACGAGCGAGTGGATGTTCAAGTCGGTGCTGTGGATGATGACTTCTCAGAAATTACAGATGGCTTAGTTCCTGGCGACC
TCGTTGTCACTCAAGGCAATCGTGAGCTTTATACATTATGGCTTAGTGGTGGTAGTAAATTTCAATCCGGCAGTCATGAG
GAGCCCCAATAA

Upstream 100 bases:

>100_bases
AGTATTTGCAAGTGTATGTGGCTTTATGTACGGCGATTGGTCCTGGTAAAACCAATGGGTTTTGCCCTTATTTAGCGTAT
CAAAGGAATGGGGATAGTAA

Downstream 100 bases:

>100_bases
ATGTTTACTCGCCTCATTGCCTGGTCTTTACATAATCGCCCTTTGATTTTGGCGTTAACGATTATTCTTTGTTTACTGGG
TGGTTATACCCTAAAACGAA

Product: chemiosmotic efflux system C protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MRWWQQMRRMALISLFLSLLFPIQGCFAHGEEIEVSEGGAKGPVHLTPAQTKMLDIKVVEATNRPMAQMLGLNGQIQLLP
DAQADVSIRISGSVTAIDVNLGDSVKAGQRLATVQSRLVGNPPPSVAVTAPIAGIIDARNINLGQAVEPNTVLFHISNRD
KLLVVAQVYEEDLGKIKVGQKVNIHALSYPKKVFAGQVTLIEPNLDPLTRTVNVRITLDNKEGLLKTGMFVRANVILARN
EAALAIPNAALLQADNEQFVFVQNGDTYERVDVQVGAVDDDFSEITDGLVPGDLVVTQGNRELYTLWLSGGSKFQSGSHE
EPQ

Sequences:

>Translated_323_residues
MRWWQQMRRMALISLFLSLLFPIQGCFAHGEEIEVSEGGAKGPVHLTPAQTKMLDIKVVEATNRPMAQMLGLNGQIQLLP
DAQADVSIRISGSVTAIDVNLGDSVKAGQRLATVQSRLVGNPPPSVAVTAPIAGIIDARNINLGQAVEPNTVLFHISNRD
KLLVVAQVYEEDLGKIKVGQKVNIHALSYPKKVFAGQVTLIEPNLDPLTRTVNVRITLDNKEGLLKTGMFVRANVILARN
EAALAIPNAALLQADNEQFVFVQNGDTYERVDVQVGAVDDDFSEITDGLVPGDLVVTQGNRELYTLWLSGGSKFQSGSHE
EPQ
>Mature_323_residues
MRWWQQMRRMALISLFLSLLFPIQGCFAHGEEIEVSEGGAKGPVHLTPAQTKMLDIKVVEATNRPMAQMLGLNGQIQLLP
DAQADVSIRISGSVTAIDVNLGDSVKAGQRLATVQSRLVGNPPPSVAVTAPIAGIIDARNINLGQAVEPNTVLFHISNRD
KLLVVAQVYEEDLGKIKVGQKVNIHALSYPKKVFAGQVTLIEPNLDPLTRTVNVRITLDNKEGLLKTGMFVRANVILARN
EAALAIPNAALLQADNEQFVFVQNGDTYERVDVQVGAVDDDFSEITDGLVPGDLVVTQGNRELYTLWLSGGSKFQSGSHE
EPQ

Specific function: Involved in the production of Medicago-specific nodulation signal molecule [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 35062; Mature: 35062

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWWQQMRRMALISLFLSLLFPIQGCFAHGEEIEVSEGGAKGPVHLTPAQTKMLDIKVVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCEEEEEEEEE
ATNRPMAQMLGLNGQIQLLPDAQADVSIRISGSVTAIDVNLGDSVKAGQRLATVQSRLVG
CCCCCHHHHHCCCCEEEECCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHCC
NPPPSVAVTAPIAGIIDARNINLGQAVEPNTVLFHISNRDKLLVVAQVYEEDLGKIKVGQ
CCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHCCCEEECCC
KVNIHALSYPKKVFAGQVTLIEPNLDPLTRTVNVRITLDNKEGLLKTGMFVRANVILARN
EEEEEEECCCHHHHCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEC
EAALAIPNAALLQADNEQFVFVQNGDTYERVDVQVGAVDDDFSEITDGLVPGDLVVTQGN
CCEEECCCCEEEECCCCEEEEEECCCCEEEEEEEEECCCCCHHHHHCCCCCCCEEEECCC
RELYTLWLSGGSKFQSGSHEEPQ
CEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWWQQMRRMALISLFLSLLFPIQGCFAHGEEIEVSEGGAKGPVHLTPAQTKMLDIKVVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCEEEEEEEEE
ATNRPMAQMLGLNGQIQLLPDAQADVSIRISGSVTAIDVNLGDSVKAGQRLATVQSRLVG
CCCCCHHHHHCCCCEEEECCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHCC
NPPPSVAVTAPIAGIIDARNINLGQAVEPNTVLFHISNRDKLLVVAQVYEEDLGKIKVGQ
CCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHCCCEEECCC
KVNIHALSYPKKVFAGQVTLIEPNLDPLTRTVNVRITLDNKEGLLKTGMFVRANVILARN
EEEEEEECCCHHHHCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEC
EAALAIPNAALLQADNEQFVFVQNGDTYERVDVQVGAVDDDFSEITDGLVPGDLVVTQGN
CCEEECCCCEEEECCCCEEEEEECCCCEEEEEEEEECCCCCHHHHHCCCCCCCEEEECCC
RELYTLWLSGGSKFQSGSHEEPQ
CEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909418; 11481432 [H]