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The map label for this gene is intF [H]

Identifier: 148360255

GI number: 148360255

Start: 1293625

End: 1294860

Strand: Reverse

Name: intF [H]

Synonym: LPC_2190

Alternate gene names: 148360255

Gene position: 1294860-1293625 (Counterclockwise)

Preceding gene: 148360254

Following gene: 148360259

Centisome position: 36.2

GC content: 37.54

Gene sequence:

>1236_bases
ATGAAAATAAACAAAACAAACGTAGAAAGCCTCCCTCTTCCGCCAGTCACCGAAGAAGGAAAAACAGCACAAAAAAGATA
TTACGATGACAACTTGAAAGGTTTCGGGATACGAGTGACTTCTGGAGGAGCAAAAGCCTTTTTTGTTGAAAAATTCATAA
ATAAAAAACGCTGCCGCATTACTTTAGGTCATTACCCAGAATTAACCGCTGAAATGGCAAAGAACAAAGCCCTACATCTT
TTAGGTCAAATTGCTATGGGTATTGACCCTATCGCTGAAAAGAAGGCAACAGAGGTTCGAGATATTACTTTGAATCAAGT
CTTTAAAGACTACCTAAAAACCAGAAAAAACTTAAAGCCAAGAACTATAGATAATTACAAGCACATATTAGACAAAGCTT
TCACCAGCTGGAAAAGCAAGCCAATGTTATCAATAACCAGAGATCGCATTGCTAAATACCACGAAAAGCTCGGCAATGAA
CATGGAGAAGCCTATGCTAATCTAGCCATGCGAATCCTAAGAGCTTTATTCAATTTTGCAGCAGGCCAATATGAAGACAG
CAGTGGTCACTCGCTTTTCATTGATAACCCTGTAAAACGTCTGTCACAAACTCGTGCGTGGTATCGCATTGAAAGACGTA
AGACTTATATTAAATCGCATGAGCTAGCCGCATGGTATTCAGGTTTGCAGGAATGTCAAAATGAAACATTACGTGATTAT
CTACTATTAATCTTATTGACTGGCCTACGCAGACAAGAAGCTGCGACCATAAAGTGGTCTGATCTCGACTTAAAAGCTAA
GACATTTACTATCAACAAAACCAAAAACAATGAATCCCATACTCTTCCTATTTCTGACTTTCTTTATGATTTGTTGATTG
TTAGAAAAAAGAAAGCAATTAATGACTATATTTTCCCAGGAACGGGTGCAGCTGGTCACATTATTGAACCCCGTAAGACT
ATAGCACACGTGATAAAAAATTCCGGTGTTCAATTTACAGTTCATGATTTGAGAAGAACTTTCATCACCATCGCGGAAAG
TTTGGACATCCCTGCTTATGCGTTGAAGCGTTTAATGAATCATAAAATGAGTAATGATGTAACTGCAGGATACATTATTG
TAGATGTTGAACGATTGAGAAAGCCAATGCAACTCATTACTGATTATATTTTAAAGTGCATGGAGGTGATTGAGTCTGCG
GACATAATCAATATACAAAATTCAAGTAAAGATTAG

Upstream 100 bases:

>100_bases
TGATGTTACAGCATGATTGCGTTATAAGTTCTATTAATGGATTTTAAACAATTGTGCGACACAAGTGCGACACATTAAAA
AGCATACGTAAAAATTAATT

Downstream 100 bases:

>100_bases
ACAGAAGAACTTTCTAATTTTGGATCGCACTGCGATCCGAATTGAGAATAAATCCATAACAAAGTTTTTAAGATTCGGAA
CGCATTGCGTTCCATATTTC

Product: phage related integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MKINKTNVESLPLPPVTEEGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPIAEKKATEVRDITLNQVFKDYLKTRKNLKPRTIDNYKHILDKAFTSWKSKPMLSITRDRIAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDSSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYSGLQECQNETLRDY
LLLILLTGLRRQEAATIKWSDLDLKAKTFTINKTKNNESHTLPISDFLYDLLIVRKKKAINDYIFPGTGAAGHIIEPRKT
IAHVIKNSGVQFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSNDVTAGYIIVDVERLRKPMQLITDYILKCMEVIESA
DIINIQNSSKD

Sequences:

>Translated_411_residues
MKINKTNVESLPLPPVTEEGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPIAEKKATEVRDITLNQVFKDYLKTRKNLKPRTIDNYKHILDKAFTSWKSKPMLSITRDRIAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDSSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYSGLQECQNETLRDY
LLLILLTGLRRQEAATIKWSDLDLKAKTFTINKTKNNESHTLPISDFLYDLLIVRKKKAINDYIFPGTGAAGHIIEPRKT
IAHVIKNSGVQFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSNDVTAGYIIVDVERLRKPMQLITDYILKCMEVIESA
DIINIQNSSKD
>Mature_411_residues
MKINKTNVESLPLPPVTEEGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHL
LGQIAMGIDPIAEKKATEVRDITLNQVFKDYLKTRKNLKPRTIDNYKHILDKAFTSWKSKPMLSITRDRIAKYHEKLGNE
HGEAYANLAMRILRALFNFAAGQYEDSSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYSGLQECQNETLRDY
LLLILLTGLRRQEAATIKWSDLDLKAKTFTINKTKNNESHTLPISDFLYDLLIVRKKKAINDYIFPGTGAAGHIIEPRKT
IAHVIKNSGVQFTVHDLRRTFITIAESLDIPAYALKRLMNHKMSNDVTAGYIIVDVERLRKPMQLITDYILKCMEVIESA
DIINIQNSSKD

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=418, Percent_Identity=26.555023923445, Blast_Score=115, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47206; Mature: 47206

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINKTNVESLPLPPVTEEGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRI
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEE
TLGHYPELTAEMAKNKALHLLGQIAMGIDPIAEKKATEVRDITLNQVFKDYLKTRKNLKP
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RTIDNYKHILDKAFTSWKSKPMLSITRDRIAKYHEKLGNEHGEAYANLAMRILRALFNFA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AGQYEDSSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYSGLQECQNETLRDY
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLILLTGLRRQEAATIKWSDLDLKAKTFTINKTKNNESHTLPISDFLYDLLIVRKKKAI
HHHHHHHCCCHHCCCEEEECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
NDYIFPGTGAAGHIIEPRKTIAHVIKNSGVQFTVHDLRRTFITIAESLDIPAYALKRLMN
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
HKMSNDVTAGYIIVDVERLRKPMQLITDYILKCMEVIESADIINIQNSSKD
HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
>Mature Secondary Structure
MKINKTNVESLPLPPVTEEGKTAQKRYYDDNLKGFGIRVTSGGAKAFFVEKFINKKRCRI
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEE
TLGHYPELTAEMAKNKALHLLGQIAMGIDPIAEKKATEVRDITLNQVFKDYLKTRKNLKP
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RTIDNYKHILDKAFTSWKSKPMLSITRDRIAKYHEKLGNEHGEAYANLAMRILRALFNFA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AGQYEDSSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYSGLQECQNETLRDY
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLILLTGLRRQEAATIKWSDLDLKAKTFTINKTKNNESHTLPISDFLYDLLIVRKKKAI
HHHHHHHCCCHHCCCEEEECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
NDYIFPGTGAAGHIIEPRKTIAHVIKNSGVQFTVHDLRRTFITIAESLDIPAYALKRLMN
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
HKMSNDVTAGYIIVDVERLRKPMQLITDYILKCMEVIESADIINIQNSSKD
HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]