Click here to switch to the map view.

The map label for this gene is 148359695

Identifier: 148359695

GI number: 148359695

Start: 2522120

End: 2522680

Strand: Direct

Name: 148359695

Synonym: LPC_1616

Alternate gene names: NA

Gene position: 2522120-2522680 (Clockwise)

Preceding gene: 148359694

Following gene: 148359696

Centisome position: 70.52

GC content: 36.72

Gene sequence:

>561_bases
ATGGATACCTGCAAAATAGCACCAGGAATTTATCAATATACTGCTGTTGATGATTGTTCTCGCTGGCGTGTACTAGAGAT
TTACAAACGCCGTGCAGCTACTAACACACTACATTTTTTAGACATGGTTCTGGAGCAATTTCCTTTTCCTGTACAGCGTA
TTCAAACGGATAGAGGATTAGAATTTTTTGCCGAAAAAGTTCAGCTAAAAATGATGAAATTAGGTATTAAATTTAGACCC
AATAAGCCAGCTTCCCCTCATTTAAATGGCAAGGTAAAGCGATCGCAAAAAACAGACCTCGAAGAATTTTATGCTATTAC
AGATTTATCTGACTTTGAAACTCTTAGAGAAGAGCTAGCTCAATGGCAATTCTTTTATAACTGGCAGCGTCCTCATGGTT
CACTTAAAGGAAAGCCTCCCTCGGCTATCGTGGCTGAATTAAGCGAAATAACTCCTTTAAGCGAAGAGGTGAGTAATAAC
TATAAAATAGACAATGAGCGTATTCAAATAGCTAATTATCATACTGATTTGATTATGAAAAAATTGAAAGGATCTCTATG
A

Upstream 100 bases:

>100_bases
AAAGCGTTAACTAGCAACCAAACACAACCAATAAAAAAAACTTAAGCGGAAAAAGAAATTTAAGCGCTATAGTCGTCCTA
TTCCTGGTGAGCGTATCCAA

Downstream 100 bases:

>100_bases
ATCTGATCCCTATCTTTTGAGAACTTATTTAAAATATGTATTTTGTTATTTTTTATAGCTTGGCACCTTCTTGGTATTTT
TCCAAATATCATATCGCTGA

Product: ISSod13 transposase

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Core Domain Protein; Integrase; Transposase-Like Protein; ISAca1 Transposase; Integrase Catalytic Subunit

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MDTCKIAPGIYQYTAVDDCSRWRVLEIYKRRAATNTLHFLDMVLEQFPFPVQRIQTDRGLEFFAEKVQLKMMKLGIKFRP
NKPASPHLNGKVKRSQKTDLEEFYAITDLSDFETLREELAQWQFFYNWQRPHGSLKGKPPSAIVAELSEITPLSEEVSNN
YKIDNERIQIANYHTDLIMKKLKGSL

Sequences:

>Translated_186_residues
MDTCKIAPGIYQYTAVDDCSRWRVLEIYKRRAATNTLHFLDMVLEQFPFPVQRIQTDRGLEFFAEKVQLKMMKLGIKFRP
NKPASPHLNGKVKRSQKTDLEEFYAITDLSDFETLREELAQWQFFYNWQRPHGSLKGKPPSAIVAELSEITPLSEEVSNN
YKIDNERIQIANYHTDLIMKKLKGSL
>Mature_186_residues
MDTCKIAPGIYQYTAVDDCSRWRVLEIYKRRAATNTLHFLDMVLEQFPFPVQRIQTDRGLEFFAEKVQLKMMKLGIKFRP
NKPASPHLNGKVKRSQKTDLEEFYAITDLSDFETLREELAQWQFFYNWQRPHGSLKGKPPSAIVAELSEITPLSEEVSNN
YKIDNERIQIANYHTDLIMKKLKGSL

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21745; Mature: 21745

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTCKIAPGIYQYTAVDDCSRWRVLEIYKRRAATNTLHFLDMVLEQFPFPVQRIQTDRGL
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCH
EFFAEKVQLKMMKLGIKFRPNKPASPHLNGKVKRSQKTDLEEFYAITDLSDFETLREELA
HHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
QWQFFYNWQRPHGSLKGKPPSAIVAELSEITPLSEEVSNNYKIDNERIQIANYHTDLIMK
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEHHHHHHHHH
KLKGSL
HHCCCC
>Mature Secondary Structure
MDTCKIAPGIYQYTAVDDCSRWRVLEIYKRRAATNTLHFLDMVLEQFPFPVQRIQTDRGL
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCH
EFFAEKVQLKMMKLGIKFRPNKPASPHLNGKVKRSQKTDLEEFYAITDLSDFETLREELA
HHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
QWQFFYNWQRPHGSLKGKPPSAIVAELSEITPLSEEVSNNYKIDNERIQIANYHTDLIMK
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEHHHHHHHHH
KLKGSL
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA