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The map label for this gene is rarA [H]

Identifier: 148359308

GI number: 148359308

Start: 2050291

End: 2051595

Strand: Reverse

Name: rarA [H]

Synonym: LPC_1205

Alternate gene names: 148359308

Gene position: 2051595-2050291 (Counterclockwise)

Preceding gene: 148359309

Following gene: 148359307

Centisome position: 57.36

GC content: 39.31

Gene sequence:

>1305_bases
ATGAGCCTATTCAATAAAGAACCTGATCCACCATTGGCTGAAAGTTTAAGGCCTCAGCATATCGATGAGGTCATAGGTCA
AAGTCATTTGCTTGGAGAGGGTAAACCTCTAAGACTTTGTTTTATGGGCTCCAAATTGCATTCTATGATCTTATGGGGGC
CACCTGGGGTCGGTAAGACTACTATAGCAAGATTAACTGCACAGGCTTTTGATTGTGAATGGATAGCATTATCAGCTGTA
TTTTCAGGAGTTAAGGATATTCGAGCTGCGGTTGAGAAAGCGCAGGAATATTTAATTCATGATAAGCAGACTATCTTATT
TATTGATGAAATTCATAGATTCAATAAAGCTCAGCAAGATGCCTTATTGCCTTATACAGAATCAGGCTTAATTACTTTCA
TTGGGGCAACTACAGAAAATCCGTCTTTTGAGGTTAATTCAGCGTTATTATCACGGGCACAAGTTTATGTTTTAAAACCG
TTATCGGAGCAGGAGTTAAAACTCTTATTTCTTAGGGCTCACCAAAGAGCTTTATCTTCTCTGCAATTTACCGAGGAAGC
CGTTGATTTTTTAATTTCTTGTGCTGATGGGGATGCCAGGAGATTACTCAATTTACTTGAGCAAACAAAAACAGCCTGCC
TAACAATTAAAACAGCAGTTGTTGATGTAGAACTTTTGCATAATGTGATAGTACAAAATAGTCGACGTTTTGATAAAGGT
GGAGAAGCGTTTTACGATCAGATTTCTGCTTTACATAAATCGGTACGAGGCTCTAATCCTGATGCGGCATTATATTGGCT
ATGTCGAATGCTGGATGGTGGTGTGGATCCATATTATTTAGCCAGACGTATTATTAGAATGTCATGGGAAGACATTGGGT
TAGCAGATCCGAAAGCGATTCAAATCGCTAATGATGCTGCTGCAACTTATGAGAGGCTTGGCTCACCCGAGGGCGAGCTT
GCTTTGGCGCAAGCTGTAATTTATTTGTCTGTTGCTGCCAAGAGCAATGCGGGATATGTCGCATTTAATCAAGCTATGGA
ATTTATAAAAAGAGACAAGTCCAGAGAAGTACCCATTCACTTGAGAAACGCTCCTACTCAATTAATGAAAAAACTAGGTT
ATGGACATGAATATCGATATGCTCATGATGAACCACACGGCTATGCGGCTGGTGAATGTTATTTACCTGAAGGAATGCCA
GAAGTAAATTGGTATAATCCGGTACAAAGAGGTTTAGAAACTAAAATTGCAGAAAAGCTCGCTTTTCTGCGCCAATTAGA
TAAAGATGTAAAAAAGAAAATTTGA

Upstream 100 bases:

>100_bases
AGTGCAGATTAAGTCAAATCCTAAGTTACCTGCCAAATTGTTCCAATTCAAGCCCCCTAAAGGTGTGGATGTGGTAAAAC
AATAATTTTAATGTTGATTT

Downstream 100 bases:

>100_bases
TTTGTTCTCTGTTTAAGCCAGGTTAGGTTTGTCACCCAATTTATCCCAAAGAAGAAATCCAATCGACATTGGTATCCGGT
GAAGTATAAAGAGTATGTCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSLFNKEPDPPLAESLRPQHIDEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAV
FSGVKDIRAAVEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNSALLSRAQVYVLKP
LSEQELKLLFLRAHQRALSSLQFTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQNSRRFDKG
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGEL
ALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMP
EVNWYNPVQRGLETKIAEKLAFLRQLDKDVKKKI

Sequences:

>Translated_434_residues
MSLFNKEPDPPLAESLRPQHIDEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAV
FSGVKDIRAAVEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNSALLSRAQVYVLKP
LSEQELKLLFLRAHQRALSSLQFTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQNSRRFDKG
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGEL
ALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMP
EVNWYNPVQRGLETKIAEKLAFLRQLDKDVKKKI
>Mature_433_residues
SLFNKEPDPPLAESLRPQHIDEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAVF
SGVKDIRAAVEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNSALLSRAQVYVLKPL
SEQELKLLFLRAHQRALSSLQFTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQNSRRFDKGG
EAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGELA
LAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMPE
VNWYNPVQRGLETKIAEKLAFLRQLDKDVKKKI

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=41.2300683371298, Blast_Score=298, Evalue=9e-81,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=37.3576309794989, Blast_Score=246, Evalue=3e-65,
Organism=Escherichia coli, GI1787119, Length=426, Percent_Identity=50.2347417840376, Blast_Score=423, Evalue=1e-120,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=38.9671361502347, Blast_Score=282, Evalue=7e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48629; Mature: 48498

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFNKEPDPPLAESLRPQHIDEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKT
CCCCCCCCCCCHHHCCCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCHH
TIARLTAQAFDCEWIALSAVFSGVKDIRAAVEKAQEYLIHDKQTILFIDEIHRFNKAQQD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCHHHHC
ALLPYTESGLITFIGATTENPSFEVNSALLSRAQVYVLKPLSEQELKLLFLRAHQRALSS
CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
LQFTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQNSRRFDKG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCC
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
QIANDAAATYERLGSPEGELALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIH
EECCHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHCCCCCCCCEE
LRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMPEVNWYNPVQRGLETKIAEKL
ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
AFLRQLDKDVKKKI
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SLFNKEPDPPLAESLRPQHIDEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKT
CCCCCCCCCCHHHCCCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCHH
TIARLTAQAFDCEWIALSAVFSGVKDIRAAVEKAQEYLIHDKQTILFIDEIHRFNKAQQD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCHHHHC
ALLPYTESGLITFIGATTENPSFEVNSALLSRAQVYVLKPLSEQELKLLFLRAHQRALSS
CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
LQFTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQNSRRFDKG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCC
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
QIANDAAATYERLGSPEGELALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIH
EECCHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHCCCCCCCCEE
LRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMPEVNWYNPVQRGLETKIAEKL
ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
AFLRQLDKDVKKKI
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]