BacMap

Definition	Legionella pneumophila str. Corby chromosome, complete genome.
Accession	NC_009494
Length	3,576,470

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The map label for this gene is ybbO [H]

Identifier: 148359219

GI number: 148359219

Start: 1942442

End: 1943293

Strand: Reverse

Name: ybbO [H]

Synonym: LPC_1113

Alternate gene names: 148359219

Gene position: 1943293-1942442 (Counterclockwise)

Preceding gene: 148359222

Following gene: 148359218

Centisome position: 54.34

GC content: 38.26

Gene sequence:

>852_bases
ATGGCGATGAATACAAAAGTTATTTTGATCACAGGATGCTCCAGTGGGATAGGTTTTGATGCTGTTTTTGCTTTGAAAAA
TAGAGGACATAGAGTGATTGCATCCTGCAGAAAAACAGAGGATGTCCAAAAATTACTAAATAAAGGGGTTGAGGCTCTCT
TGTTGGATGTAAGTAACCCTATTTCAATCCAAAGTGCATTTGCGCAGTTGTTAATTATGACGTCGGGTCACCTGGATGTA
TTGATTAATAATGCAGGATACGGTCAGGTAGGTGCTCTTGAGGATATTTCTCGGGATATTCTTCGCCAACAATTTGAAAC
GAACGTATTTGGTTTGCAAGATTTGACCAATTTGGTTATTCCTGTAATGAGGGAACAAGGACAAGGACGCATAATCAATA
TCAGCTCTATACTTGGCGTAGTTAGCATGCCATTTCGCGGTGCTTATAATGCCTCCAAATATGCATTGGAGGGCTTAAGT
GACACACTTCGACTGGAATTGTCTGGTTCAGGTATTAATGTCATAACAATAGAGCCTGGCCCTATAAATAGCCGATTTCG
TGATAATGCGGTGGACTTATCTTTACAACAAATACCAATGGAAAAAAGTTATTTCAAGAATCAATACAGAAATATGCTGA
GCAATTTTAAACAGAAGAAGGCAGACTCGTTTTTCACTCGGGATACTGATGCAGTGATAAAAAAACTGGTTCATGCCGTG
GAGTCAAGGAAACCAAAACCCAAGTACCCTGTAACTTTTCCAGCTTATTTTTTAATTGGTTTAAAACGATTCTTTACTAC
ACGTTTATTAGATAGGTTTATTTTATTTTTATCCAGGAAGGAGCTGGGTTAA

Upstream 100 bases:

>100_bases
GAAAAAGTGAAATATAAGTCAAAAATTGAACAAATAATTATCATAATAGTGGTAATTCGATAGATAGCTTAGTACGATAG
TTAAAAATTAGGCATAGGTC

Downstream 100 bases:

>100_bases
AGCAACTTATTGGTAATATTATAAAATAGTCATAAGTTGATGTTGATAATTAGCAACTACTGTACAGACCTCTCTTAAAA
AGATACTATAGTTATTATGA

Product: short chain dehydrogenase/reductase family transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MAMNTKVILITGCSSGIGFDAVFALKNRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNPISIQSAFAQLLIMTSGHLDV
LINNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLVIPVMREQGQGRIINISSILGVVSMPFRGAYNASKYALEGLS
DTLRLELSGSGINVITIEPGPINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAV
ESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG

Sequences:

>Translated_283_residues
MAMNTKVILITGCSSGIGFDAVFALKNRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNPISIQSAFAQLLIMTSGHLDV
LINNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLVIPVMREQGQGRIINISSILGVVSMPFRGAYNASKYALEGLS
DTLRLELSGSGINVITIEPGPINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAV
ESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG
>Mature_282_residues
AMNTKVILITGCSSGIGFDAVFALKNRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNPISIQSAFAQLLIMTSGHLDVL
INNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLVIPVMREQGQGRIINISSILGVVSMPFRGAYNASKYALEGLSD
TLRLELSGSGINVITIEPGPINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAVE
SRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=264, Percent_Identity=32.1969696969697, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=34.1836734693878, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI223718074, Length=259, Percent_Identity=28.5714285714286, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI150247226, Length=293, Percent_Identity=29.0102389078498, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI50726952, Length=282, Percent_Identity=28.3687943262411, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI40548397, Length=294, Percent_Identity=31.9727891156463, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI214010158, Length=294, Percent_Identity=31.9727891156463, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI214010156, Length=294, Percent_Identity=31.9727891156463, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI22758144, Length=294, Percent_Identity=31.9727891156463, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=31.8407960199005, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI19743808, Length=285, Percent_Identity=28.4210526315789, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI22507405, Length=269, Percent_Identity=32.7137546468402, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI44680136, Length=266, Percent_Identity=28.1954887218045, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI44680133, Length=266, Percent_Identity=28.1954887218045, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI17738292, Length=266, Percent_Identity=28.1954887218045, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI4504503, Length=295, Percent_Identity=25.0847457627119, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI119392083, Length=307, Percent_Identity=28.3387622149837, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=29.3814432989691, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI32483357, Length=188, Percent_Identity=29.7872340425532, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI109715829, Length=195, Percent_Identity=31.2820512820513, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI32455239, Length=212, Percent_Identity=30.6603773584906, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI5031765, Length=212, Percent_Identity=30.6603773584906, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=27.979274611399, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI59889578, Length=165, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=200, Percent_Identity=26, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI225579078, Length=196, Percent_Identity=31.1224489795918, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=31.413612565445, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7705925, Length=206, Percent_Identity=24.7572815533981, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=31.413612565445, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI166795268, Length=201, Percent_Identity=31.3432835820896, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1786701, Length=269, Percent_Identity=41.635687732342, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1787820, Length=193, Percent_Identity=33.160621761658, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787335, Length=236, Percent_Identity=27.9661016949153, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=32.0652173913043, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=33.1578947368421, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=28.804347826087, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082160, Length=185, Percent_Identity=26.4864864864865, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367365, Length=187, Percent_Identity=30.4812834224599, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=246, Percent_Identity=32.520325203252, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17570069, Length=219, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI115534660, Length=293, Percent_Identity=25.2559726962457, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17557780, Length=288, Percent_Identity=26.0416666666667, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17507613, Length=287, Percent_Identity=24.0418118466899, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI32563809, Length=287, Percent_Identity=24.0418118466899, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI193210355, Length=259, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=32.48730964467, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=197, Percent_Identity=30.4568527918782, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=27.6381909547739, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI72001658, Length=209, Percent_Identity=32.5358851674641, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=29.5918367346939, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=201, Percent_Identity=28.8557213930348, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=33.1658291457286, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=231, Percent_Identity=29.4372294372294, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6322861, Length=215, Percent_Identity=27.4418604651163, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=32.1428571428571, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24651139, Length=271, Percent_Identity=31.3653136531365, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=31.6831683168317, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=33.5106382978723, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571526, Length=184, Percent_Identity=33.1521739130435, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=184, Percent_Identity=34.2391304347826, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24643142, Length=206, Percent_Identity=30.5825242718447, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21355319, Length=208, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=31.0344827586207, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24647946, Length=226, Percent_Identity=28.7610619469027, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45553409, Length=225, Percent_Identity=28.8888888888889, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24647948, Length=225, Percent_Identity=28.8888888888889, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=31.4432989690722, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007236, Length=211, Percent_Identity=29.3838862559242, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355631, Length=177, Percent_Identity=27.683615819209, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007238, Length=176, Percent_Identity=30.6818181818182, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641388, Length=215, Percent_Identity=28.8372093023256, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571387, Length=197, Percent_Identity=30.4568527918782, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24640442, Length=183, Percent_Identity=28.4153005464481, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31611; Mature: 31480

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNTKVILITGCSSGIGFDAVFALKNRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNP
CCCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCC
ISIQSAFAQLLIMTSGHLDVLINNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLVI
CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
PVMREQGQGRIINISSILGVVSMPFRGAYNASKYALEGLSDTLRLELSGSGINVITIEPG
HHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEECCC
PINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAV
CCCCCCCCCHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AMNTKVILITGCSSGIGFDAVFALKNRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNP
CCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCC
ISIQSAFAQLLIMTSGHLDVLINNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLVI
CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
PVMREQGQGRIINISSILGVVSMPFRGAYNASKYALEGLSDTLRLELSGSGINVITIEPG
HHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEECCC
PINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAV
CCCCCCCCCHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]