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The map label for this gene is dotC

Identifier: 148358590

GI number: 148358590

Start: 3198361

End: 3199272

Strand: Direct

Name: dotC

Synonym: LPC_0462

Alternate gene names: NA

Gene position: 3198361-3199272 (Clockwise)

Preceding gene: 148358591

Following gene: 148358589

Centisome position: 89.43

GC content: 40.57

Gene sequence:

>912_bases
ATGCGAAAATTTATTCTTAGTTTATCTATTTTGCTATCAGCCCTCCTGGTAGCCTGTTCTTCTCGTAATCATTACGGGGA
TACTGGCTCATTGGCAGGACTTCAAGCGATGGCTGATTCAAAATACACCCGAGCTCAAAAAAAACAAAAAATGGGTAAAA
TTCGCGAGATGGCCCTTAAGGAAACCGCTTTAAGTGTTGGCGCCCAGGCTGGGTTAGCCTGGAGAGCAAAAATAATTGAC
GAGCAATTAAACAAACAGGCAAGGAATCTTGATGCAATTTATGATTTTAATTCCCTGGTCTTAGAGCATAATATTTTGCC
TCCTGTATTACTTGAGGGAAGGAATACTTTGAATCTTGCAGATGCTCAAAGTATCCGTATTTCAGACCGCACCTATAAAG
TCGCAAAACAAGCTCATTTCATTACTACTCCACCTACCTGGCGGCAATATTTGTGGATGGATTATGTGAAACCTGAAGCT
CCCAATGTCACTCTACTCCCCAAAACCAAGGCTGAAAAAGAAATATGGTGCATCTATACTGAAAGAGGGTGGAAAAATGG
TATAGATCAGGCAAACACCATTTTGGAAGAAAATATTGCCCGCATTAAAGAAGATTTCGGCGGTATGATTCTTTATAGAA
AATTACTGGCTATGAACATGGTATCTCCTCCTTATGTTTCTCATACTGACTTGGGCGTAACTGGGGATGGCTCAGAAATT
CATATCGATGACAGGGTCTTACGCATCACGGCGTTACCTGAACTTAATGTCAATAGTGCAGAATGGAGAGCTGCGGTCGC
CAAAGATGAAAATGCTCTCGAACGTTTCAAAAATATGGAAAAACTGGCAAATCAGGCTAAAATTGTTATAACAAACAAAT
CCTGGCAACCTATTATAGCACCAGTAAGTTAA

Upstream 100 bases:

>100_bases
GATGAGAGTCTGGCCGAGATCCTTAGAGATATTGATTATCAAGCTGGGAAAAAAGCCAGTATTCATGTGTATCCTAACAG
TCAGGTCGTAGAATTGCGCT

Downstream 100 bases:

>100_bases
TGTCTATGGATAATATTAATTTAATGCCCGATGAGCCAACTCGTTTCACTCCAGTATTCATGGACAGAATGCTGGAGCAT
GCAGAAAGCCTGAATGCTTC

Product: organelle trafficking lipoprotein defect DotC

Products: NA

Alternate protein names: DotC Protein; Lipoprotein; LysM Domain-Containing; TraI Conjugal Transfer Protein; Conjugal Transfer Protein; Conjugal Transfer Protein DotC/TraI; Type IV Secretion System Protein DotC; Defect In Organelle Trafficking Lipoprotein DotC; Relaxase TraI; DotC-Like Type IV Secretion System Protein

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALKETALSVGAQAGLAWRAKIID
EQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLADAQSIRISDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEA
PNVTLLPKTKAEKEIWCIYTERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIAPVS

Sequences:

>Translated_303_residues
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALKETALSVGAQAGLAWRAKIID
EQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLADAQSIRISDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEA
PNVTLLPKTKAEKEIWCIYTERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIAPVS
>Mature_303_residues
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALKETALSVGAQAGLAWRAKIID
EQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLADAQSIRISDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEA
PNVTLLPKTKAEKEIWCIYTERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIAPVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34118; Mature: 34118

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ETALSVGAQAGLAWRAKIIDEQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCCCCCEECCCCEEEEC
DAQSIRISDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEAPNVTLLPKTKAEKEIWCIYT
CCCEEEECCHHHHHHHHCEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEE
ERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
CCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIA
EECCEEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEE
PVS
CCC
>Mature Secondary Structure
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ETALSVGAQAGLAWRAKIIDEQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCCCCCEECCCCEEEEC
DAQSIRISDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEAPNVTLLPKTKAEKEIWCIYT
CCCEEEECCHHHHHHHHCEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEE
ERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
CCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIA
EECCEEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEE
PVS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA