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The map label for this gene is rbcR [H]

Identifier: 148358491

GI number: 148358491

Start: 387515

End: 388396

Strand: Reverse

Name: rbcR [H]

Synonym: LPC_0357

Alternate gene names: 148358491

Gene position: 388396-387515 (Counterclockwise)

Preceding gene: 148358492

Following gene: 148358490

Centisome position: 10.86

GC content: 39.8

Gene sequence:

>882_bases
ATGGATATTAGAGACATCAAATCCTTTCTCGCTGTCGTCGAATACCATTCTCTCACCTTGGCAGCTAAAAAATTGCATGT
CACTCAATCTGCCATTAGCAAACGCATTCGAAAAATAGAGGACGAGTTAAATATACGATTGATAATTAGTGAAGGCTCGA
GGTTAATTTTTACCGAAGCAGCCAAGCAGCTTATCCCTTATGCCAGGCAAATGCTTTCCGCACATCAAAATATGGTTCAC
ACCCTGAAAAACTCGCAACAATTCACGCAAAGCATCATCATAGGGGCTTCCGTGTATGTGTCTCACTACGTATTGCCAGG
CTTTTTTAAATACTTAAAGGAAACCCACCCGACCATTCAAGCGCATCTGAAAACCATTAGTGAAAAGGAAGTCGAGTATA
TTCTAAACCACGGCACAGTTGATCTGGTAATCTGCCCGGCACGGGAAGCATCTGAAAAATTATTGAGCAACTCATTGCTC
TGGGAAGAAAAACTGAATTTGGTTGTGGCAATAAATCATGAGCTAGCCCATAGAACTTCCGCACTTTCACTCTCAGAACT
ATCAGAGTACCCGGCCATCTTAACTGAGAAAGGAGCGGCATTGCGTGACAAGCTTGATACCCTATTTGAAAAAAATCAAC
TGATACTAAACCTGGGTTTTGAAATGAGCACTATCGATGCCATAAAATCTCTAGTAGAGTACGGTTTAGGCTGGAGTTAT
CTGCCTGATAGTTTACTGTCAGAAAAATTAAAAATCTTAAAAATAAAAGACCTTGAGCTAACAATCCCATTTCATGCTTT
TTATCTCAAAAAAAGAATCAGTGACCGCTTGATTAATGACCTGCTATGCGATTTTAAAAAATGGCAAAATCGGGATAATT
AA

Upstream 100 bases:

>100_bases
CCCTCGACCCCTGCTTAGAACATTATGATCATCTGCCATCCTTGTTTAGAAAGCGCTTAGCGCCGCTATGCTATACTTCT
TGTAAAAAGGCAAGCATTCT

Downstream 100 bases:

>100_bases
CAGGAATGAATCCAGGACGAAAATAACCGTCTTTATCAAAATCGAAACAACAGACCGTTGTTAATACGTTTTTACAACAC
TAACATTGCAATAGACTGAA

Product: LysR family transporter transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAISKRIRKIEDELNIRLIISEGSRLIFTEAAKQLIPYARQMLSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQAHLKTISEKEVEYILNHGTVDLVICPAREASEKLLSNSLL
WEEKLNLVVAINHELAHRTSALSLSELSEYPAILTEKGAALRDKLDTLFEKNQLILNLGFEMSTIDAIKSLVEYGLGWSY
LPDSLLSEKLKILKIKDLELTIPFHAFYLKKRISDRLINDLLCDFKKWQNRDN

Sequences:

>Translated_293_residues
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAISKRIRKIEDELNIRLIISEGSRLIFTEAAKQLIPYARQMLSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQAHLKTISEKEVEYILNHGTVDLVICPAREASEKLLSNSLL
WEEKLNLVVAINHELAHRTSALSLSELSEYPAILTEKGAALRDKLDTLFEKNQLILNLGFEMSTIDAIKSLVEYGLGWSY
LPDSLLSEKLKILKIKDLELTIPFHAFYLKKRISDRLINDLLCDFKKWQNRDN
>Mature_293_residues
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAISKRIRKIEDELNIRLIISEGSRLIFTEAAKQLIPYARQMLSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQAHLKTISEKEVEYILNHGTVDLVICPAREASEKLLSNSLL
WEEKLNLVVAINHELAHRTSALSLSELSEYPAILTEKGAALRDKLDTLFEKNQLILNLGFEMSTIDAIKSLVEYGLGWSY
LPDSLLSEKLKILKIKDLELTIPFHAFYLKKRISDRLINDLLCDFKKWQNRDN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=28.2258064516129, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788296, Length=229, Percent_Identity=27.0742358078603, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787530, Length=245, Percent_Identity=26.9387755102041, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI157672245, Length=248, Percent_Identity=29.0322580645161, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788481, Length=261, Percent_Identity=24.904214559387, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790208, Length=287, Percent_Identity=23.3449477351916, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=23.7354085603113, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693105, Length=252, Percent_Identity=24.2063492063492, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=273, Percent_Identity=24.5421245421245, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87082132, Length=269, Percent_Identity=21.1895910780669, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=258, Percent_Identity=23.6434108527132, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=24.5967741935484, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788748, Length=252, Percent_Identity=22.6190476190476, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=25.1700680272109, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33572; Mature: 33572

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAISKRIRKIEDELNIRLIISEGSRLIFTEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEHHHH
AKQLIPYARQMLSAHQNMVHTLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
AHLKTISEKEVEYILNHGTVDLVICPAREASEKLLSNSLLWEEKLNLVVAINHELAHRTS
HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHH
ALSLSELSEYPAILTEKGAALRDKLDTLFEKNQLILNLGFEMSTIDAIKSLVEYGLGWSY
HHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
LPDSLLSEKLKILKIKDLELTIPFHAFYLKKRISDRLINDLLCDFKKWQNRDN
CCHHHHHHHHHHEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAISKRIRKIEDELNIRLIISEGSRLIFTEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEHHHH
AKQLIPYARQMLSAHQNMVHTLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
AHLKTISEKEVEYILNHGTVDLVICPAREASEKLLSNSLLWEEKLNLVVAINHELAHRTS
HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHH
ALSLSELSEYPAILTEKGAALRDKLDTLFEKNQLILNLGFEMSTIDAIKSLVEYGLGWSY
HHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
LPDSLLSEKLKILKIKDLELTIPFHAFYLKKRISDRLINDLLCDFKKWQNRDN
CCHHHHHHHHHHEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]