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The map label for this gene is ymfN [H]

Identifier: 148268440

GI number: 148268440

Start: 2151961

End: 2153622

Strand: Reverse

Name: ymfN [H]

Synonym: SaurJH9_2023

Alternate gene names: 148268440

Gene position: 2153622-2151961 (Counterclockwise)

Preceding gene: 148268441

Following gene: 148268439

Centisome position: 74.09

GC content: 32.73

Gene sequence:

>1662_bases
ATGATTAGTAATAAATACGTTGATGAATATATAAATTTGTGGAAACAAGGAAAGATAATTTTAAATAAAGAAAGAATTGA
TCTCTTTAATTATCTACAAACACATATATATTCACGAGATGATGTATATTTTGATGAACAGAAAATCGAGGATTGTATCA
AATTTATTGAAAAATGGTATTTTCCAACATTACCATTTCAAAGGTTTATCATAGCTAATATATTTCTTATAGATAAAAAT
ACAGATGAAGCTTTCTTTACAGAATTTGCTATTTTCATGGGACGTGGAGGCGGGAAAAACGGTCTAATAAGTGCTATTAG
TGATTTTCTTTCTACGCCCTTACACGGAGTTAAAGAATATCACATCTCCATTGTTGCTAATAGTGAAGATCAAGCAAAAA
CATCGTTTGATGAAATCAGAACCGTTTTAATGGATAACAAACGAAATAAGACGGGTAAAACGCCAAAAGCTCCTTATGAA
GTTAGTAAAACAGAAATAATAAACCGTGCAACTAAATCGGTTATTCGATATAACACATCAAACACAAAAACCAAAGACGG
TGGACGTGAGGGGTGTGTTATTTTTGATGAAATTCATTATTTCTTTGGTCCTGAAATGGTAAACGTCAAACGTGGTGGAT
TAGGTAAAAAGAAAAATAGAAGAACGTTTTATATAAGTACTGATGGTTTTGTTAGAGAGGGTTATATCGATGCAATGAAG
CACAAAATTGCAAGTGTATTAAGTGGCAAGGTTAAAAATAGTAGATTGTTTGCTTTTTATTGTAAATTAGACGATCCAAA
AGAAGTTGATGACAGACAGACGTGGGAAAAGGCGAACCCAATGTTACATAAACCGTTATCAGAATACGCTAAAACACTGC
TAAGCACGATTGAAGAAGAATATAACGATTTACCATTCAACCGTTCAAATAAGCCCGAATTCATGACTAAGCGAATGAAT
TTGCCTGAAGTTGACCTTGAAAAAGTAATAGCACCATGGAAAGAAATACTAGCGACTAATAGAGAGATACCAAATTTAGA
TAATCAAATGTGTATTGGTGGTTTAGACTTTGCAAACATTCGAGATTTTGCAAGTGTAGGGCTATTATTCCGAAAAAACG
ATGATTACATTTGGTTAGGACATTCGTTTGTAAGACAAGGGTTTTTGGATGATGTCAAATTAGAACCTCCTATTAAAGAA
TGGGAAAAAATGGGATTATTGACCATTGTCGATGATGATGTCATTGAAATTGAATATATAGTTGATTGGTTTTTAAAAGC
TAGAGAAAAATATGGGCTTGAAAAAGTCATAGCTGATAATTATAGAACTGATATTGTAAGACGTGCGTTTGAGGATGCTG
GTATAAAACTTGAAGTACTTAGAAATCCAAAAGCAATACATGGATTACTTGCACCACGTATCGATACAATGTTTGCGAAA
CATAACGTAATATATGGAGACAATCCTTTGATGCGTTGGTTTACTAATAATGTTGCTGTAAAAATCAAGCCGGATGGAAA
TAAAGAGTATATCAAAAAAGATGAAGTCAGACGTAAAACGGATGGATTTATGGCATTTGTTCATGCGTTATATAGAGCGG
ATGATATAGTAGACAAAGACATGTCTAAAGCACTTGATGCATTAATGAGTATAGATTTCTAA

Upstream 100 bases:

>100_bases
TTAATGCTAGAGATGCTGCATATCAAAAAATAATCAAACAATTATCGGATTTATTGCCCGAAGAGAAAGAAGACACAGAA
ACGCCATCTGATGATTACCT

Downstream 100 bases:

>100_bases
TAGAGGAGGTGAGACATGAGTATTCTAGAAAAGATATTTAAAACTAGGAAAGATATATCATATATGCTTGATTTAGATAT
GATAGAAGATTTATCACAAC

Product: phage terminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWYFPTLPFQRFIIANIFLIDKN
TDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYE
VSKTEIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMK
HKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMN
LPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKE
WEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAK
HNVIYGDNPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKDMSKALDALMSIDF

Sequences:

>Translated_553_residues
MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWYFPTLPFQRFIIANIFLIDKN
TDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYE
VSKTEIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMK
HKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMN
LPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKE
WEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAK
HNVIYGDNPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKDMSKALDALMSIDF
>Mature_553_residues
MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWYFPTLPFQRFIIANIFLIDKN
TDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYE
VSKTEIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMK
HKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMN
LPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKE
WEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAK
HNVIYGDNPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKDMSKALDALMSIDF

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 64312; Mature: 64312

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWY
CCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHC
FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY
CCCCCHHHHHHEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHCCEEE
HISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKTEIINRATKSVIRYNTS
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCC
NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMK
CCCCCCCCCCCCEEEEEHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHH
HKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEE
HHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
YNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI
HHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHH
RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI
HHHHHHCEEEECCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHCCEEEEECCCHHHHHHH
VDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAK
HHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH
HNVIYGDNPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD
CCEEECCCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSKALDALMSIDF
HHHHHHHHHHCCC
>Mature Secondary Structure
MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWY
CCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHC
FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY
CCCCCHHHHHHEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHCCEEE
HISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKTEIINRATKSVIRYNTS
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCC
NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMK
CCCCCCCCCCCCEEEEEHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHH
HKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEE
HHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
YNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI
HHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHH
RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI
HHHHHHCEEEECCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHCCEEEEECCCHHHHHHH
VDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAK
HHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH
HNVIYGDNPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD
CCEEECCCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSKALDALMSIDF
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]