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The map label for this gene is infC [H]

Identifier: 148268161

GI number: 148268161

Start: 1836104

End: 1836706

Strand: Reverse

Name: infC [H]

Synonym: SaurJH9_1738

Alternate gene names: 148268161

Gene position: 1836706-1836104 (Counterclockwise)

Preceding gene: 148268162

Following gene: 148268160

Centisome position: 63.19

GC content: 34.99

Gene sequence:

>603_bases
GTGTATAAGGAAGAGCGGGTATTTTATACCTGCTCTTCCTTTTTGCTTGGTGCAAATTTCGTAAAAATTTTGGAGGTGTC
AACCATAGCAAAAGATCAAACTCAAATCAATGACAAAATTCGTGCAAAAGAATTACGTTTAATCGGTCAAGATGGTGAAC
AAATTGGTGTTAAATCAAAGCGTGAAGCTTTAGAAATGGCTGAACGTGTAGATTTAGACTTAGTGGTCGTTGCACCGAAT
GCGAAACCACCAGTTGCAAGAATTATGGATTACGGTAAATTCAAATTCGAACAACAGAAAAAAGAAAAAGAAATGAAAAA
GAAACAAAAAATTATCAATGTTAAAGAAATTCGTTTAAGTCCAACAATTGAGGAACATGATTTCCAAACTAAGTTGAAAA
ACGGACGTAAATTCTTAACTAAAGGCGATAAATGTAAAGTATCTATTCGTTTCAGAGGGCGTGCCATTACGCATAAGGAA
ATTGGTCAACGTGTGCTAGAAAAATATGCAGATGAATGCAAAGATATAGCAACAGTTGAACAAAAACCTAAAATGGACGG
GCGTCAAATGTTTATCATGTTAGCGCCAACAGCTGAAAAATAA

Upstream 100 bases:

>100_bases
TTAACAACGTTGAATACGAAACGAACCAAGTAGAAGCACCCGCTTCTCACCTGTAGCGACGCATAAAGCAGTTGGCAGGT
TAATCACATTACACATAACT

Downstream 100 bases:

>100_bases
TTAAAGCTATTACAGGAGGACTTATATTATGCCAAAAATGAAAACTCACCGCGGAGCAGCTAAACGTGTTAAAAGAACTG
CTTCAGGTCAATTAAAACGT

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MYKEERVFYTCSSFLLGANFVKILEVSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPN
AKPPVARIMDYGKFKFEQQKKEKEMKKKQKIINVKEIRLSPTIEEHDFQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKE
IGQRVLEKYADECKDIATVEQKPKMDGRQMFIMLAPTAEK

Sequences:

>Translated_200_residues
MYKEERVFYTCSSFLLGANFVKILEVSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPN
AKPPVARIMDYGKFKFEQQKKEKEMKKKQKIINVKEIRLSPTIEEHDFQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKE
IGQRVLEKYADECKDIATVEQKPKMDGRQMFIMLAPTAEK
>Mature_200_residues
MYKEERVFYTCSSFLLGANFVKILEVSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPN
AKPPVARIMDYGKFKFEQQKKEKEMKKKQKIINVKEIRLSPTIEEHDFQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKE
IGQRVLEKYADECKDIATVEQKPKMDGRQMFIMLAPTAEK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=164, Percent_Identity=53.0487804878049, Blast_Score=162, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 23152; Mature: 23152

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKEERVFYTCSSFLLGANFVKILEVSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSK
CCCCCEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHH
REALEMAERVDLDLVVVAPNAKPPVARIMDYGKFKFEQQKKEKEMKKKQKIINVKEIRLS
HHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHEEEC
PTIEEHDFQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKEIGQRVLEKYADECKDIATVE
CCCCHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QKPKMDGRQMFIMLAPTAEK
CCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MYKEERVFYTCSSFLLGANFVKILEVSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSK
CCCCCEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHH
REALEMAERVDLDLVVVAPNAKPPVARIMDYGKFKFEQQKKEKEMKKKQKIINVKEIRLS
HHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHEEEC
PTIEEHDFQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKEIGQRVLEKYADECKDIATVE
CCCCHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QKPKMDGRQMFIMLAPTAEK
CCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA