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The map label for this gene is yrdC [C]

Identifier: 148267411

GI number: 148267411

Start: 1030559

End: 1031200

Strand: Direct

Name: yrdC [C]

Synonym: SaurJH9_0977

Alternate gene names: 148267411

Gene position: 1030559-1031200 (Clockwise)

Preceding gene: 148267410

Following gene: 148267412

Centisome position: 35.45

GC content: 25.7

Gene sequence:

>642_bases
ATGGAAATTTTAAATGATTCTGTAAAAAGTTTTGAAAAACTTTATTTACAATTACAAGATGGTTTTCCAGTGATTGTTCC
TACTGATACTAATTATAATTTATGTAGTTTACCAAACAATGATCTTTGTATCGATAAAATATTTGAATATAAAAAGAGAT
CGAAAGATAAGCCATTATCATTATTTATTGATAAGCCAGAGGATTGGAAATTGTATGGAGATAATCAAAATACGGAAATA
GTTGATAAACTAGTTGAAATATTTTGGCCTGGACCATTAAATATTATTTTAAAAAATAAAACAAGCTATAATTATATGCT
CAATAATTCAGATAGTATAGCTATAGGATGTGTGCAAAATAAAACGATGAGAAGGTTTATTTCATATATTAATTCACCTA
TAGCAATTACTTCAGCAAATATCTCTGGAACTGCCGATGATATTTTAATAACTGAAAATGAAGCAATTAAGCACATGGGC
GAAAATGTAAGATATATGCTAAGAAGTCAAAATAAAACTAACTATAAAACATCTAGTACGATTATTAAAGTGACAGATAA
TAAAATTGAATTATTAAGAGAAGGAGATATAAAGTTTGAAGAAATAAAAGAAAGACTAGGTACAGGTATTATTTATGAAT
AA

Upstream 100 bases:

>100_bases
GAAAATATTTCTTTCTATAAACTTGTGAACAAGTTTTCACCTGAAGTAGCACCTGAAGATACAGTGGATTTACTTCAGAT
AATAAAAAGGAGGAGTAAAG

Downstream 100 bases:

>100_bases
GTTAATACTTGGGATTTATTTGTACCGAATTTTTTCACGAGCATACTTTTATTTACCGTTTTTATTAATTTACTTTTTGA
TTCAAGGTTATTCCATAATA

Product: SUA5/yciO/yrdC domain-containing protein

Products: NA

Alternate protein names: Translation Factor; SUA5 Protein; Sua5 Related Protein; Sua5/Ycio/Yrdc/Ywlc Family Protein; Sua5/YciO/YrdC Family Protein; Translation Factor Protein; Sua5 Family Protein; Sua5/YciO/YrdC/YwlC Family Translation Factor; SUA5/YciO/YrdC Domain; Universally Conserved Protein; Translation Factor Sua5 Protein; YrdC/Sua5 Protein; SUA5/YciO/YrdC Family Protein; Translation Factor Sua5/YciO/YrdC/YwlC Family; Sua5 Superfamily-Related Protein; Translation Factor Sua5/YciO/YrdC Family

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQNTEI
VDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGCVQNKTMRRFISYINSPIAITSANISGTADDILITENEAIKHMG
ENVRYMLRSQNKTNYKTSSTIIKVTDNKIELLREGDIKFEEIKERLGTGIIYE

Sequences:

>Translated_213_residues
MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQNTEI
VDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGCVQNKTMRRFISYINSPIAITSANISGTADDILITENEAIKHMG
ENVRYMLRSQNKTNYKTSSTIIKVTDNKIELLREGDIKFEEIKERLGTGIIYE
>Mature_213_residues
MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQNTEI
VDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGCVQNKTMRRFISYINSPIAITSANISGTADDILITENEAIKHMG
ENVRYMLRSQNKTNYKTSSTIIKVTDNKIELLREGDIKFEEIKERLGTGIIYE

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24549; Mature: 24549

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLS
CCCCHHHHHHHHHHHEEECCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEE
LFIDKPEDWKLYGDNQNTEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGCVQN
EEEECCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCEEEEEECC
KTMRRFISYINSPIAITSANISGTADDILITENEAIKHMGENVRYMLRSQNKTNYKTSST
HHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCHHHHHHCHHHEEHHHCCCCCCCCCCCE
IIKVTDNKIELLREGDIKFEEIKERLGTGIIYE
EEEEECCCEEEEECCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLS
CCCCHHHHHHHHHHHEEECCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEE
LFIDKPEDWKLYGDNQNTEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGCVQN
EEEECCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCEEEEEECC
KTMRRFISYINSPIAITSANISGTADDILITENEAIKHMGENVRYMLRSQNKTNYKTSST
HHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCHHHHHHCHHHEEHHHCCCCCCCCCCCE
IIKVTDNKIELLREGDIKFEEIKERLGTGIIYE
EEEEECCCEEEEECCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA