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The map label for this gene is xerD [C]

Identifier: 148243783

GI number: 148243783

Start: 177917

End: 178909

Strand: Direct

Name: xerD [C]

Synonym: Acry_3266

Alternate gene names: 148243783

Gene position: 177917-178909 (Clockwise)

Preceding gene: 148243782

Following gene: 148243789

Centisome position: 87.39

GC content: 65.76

Gene sequence:

>993_bases
ATGAACGCCGTCACCTTGCCCGCGCTGATCCAGCGCTTCTTCACCGACCGGCTTTGCACGCAACTGGAGGCGAGCCGACA
TACGGTCGCCGGCTATCGCGATACGTTCCGGCTGCTGCTCAGATATGCGAGCGCCCGCCGCAAAAAGCCGCCGGTCAACC
TGACGGTCGAAGACATCGACGCCGATCTGGTCGCGGACTTCCTCGCCCACACCGAGACCGCGCGGGGTAATAGCGCTCGC
AGCCGTAATACCCGGCTCGCCGCGATCCGATCGTTCTTCCGCTTCGTCGCGATGACCGATCCGACTTGGCTGCTGCACTG
CCAGCGCATCCTCGCCATGCCCAATAAGCGCTATGTGAAGCGTGCGGTCACGTTCCTCGATGCCGAGGAAATGGCGGCGC
TGTTGGCGGCTCCGGATCGTACAACATGGGCGGGGCGGCGCGATCACGCTCTGCTCCTGCTTGCGGTCCAGACAGGCCTG
CGGGCTTCCGAACTGGTCGGCCTCACGCGGGGCGATGTCGTGCTGGGGACCGGCGCGCACATCCGTTGCATGGGCAAGGG
CCGGAAGGAGCGCGCCACCCCGCTTCGCCGCGAGACAGCCAAGCTGCTGGCGACGTGGATCGGCAACGACAAAGATGAGG
GCAAGCCGCTGTTCCCGTCGATCCGGGGCGAACGGCTGAGCCGTGACGCTCTTGAGCATCTGGTCCGCAAGCACTGCCTC
ACGGCGTCGCGCGCGTGCCCGAGCATCGGCACGAAACAGGTCACGCCACATACGCTGCGCCACAGCACGGCGATGGACCT
GCTCCACCACGGCGTTGATCCTGCGGTGATCGCGCTCTGGCTTGGTCACGAGAACGTCGAGACCACCCAAATCTACATCC
ATGCCGACATGCGGATGAAGGAAAAGGCGCTCGCTCGCGTCGCCGCTCCAGCCACGCCGTCGGGCCGGTTCCGGCCCGAC
GATCAACTCCTCGCGTTCCTGGAAGGGCTCTGA

Upstream 100 bases:

>100_bases
ATAGCAGCCCTTCCCGAACATACTGGTATCTGGAGGCGGTCCCGGAACTGCTCGATCTGGCGATAGCCCGTGCCACCGCG
AGCGGCGGGGAGATGGCACA

Downstream 100 bases:

>100_bases
TTATGCCGAACAGCCGCATGGCCAATGCCGGGCTATCCGGCCTCCAGCGGAGGCCATGCGGCATAATCCGGATCGCGGCA
TTATGCCCCAGCTCATGCAG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MNAVTLPALIQRFFTDRLCTQLEASRHTVAGYRDTFRLLLRYASARRKKPPVNLTVEDIDADLVADFLAHTETARGNSAR
SRNTRLAAIRSFFRFVAMTDPTWLLHCQRILAMPNKRYVKRAVTFLDAEEMAALLAAPDRTTWAGRRDHALLLLAVQTGL
RASELVGLTRGDVVLGTGAHIRCMGKGRKERATPLRRETAKLLATWIGNDKDEGKPLFPSIRGERLSRDALEHLVRKHCL
TASRACPSIGTKQVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRMKEKALARVAAPATPSGRFRPD
DQLLAFLEGL

Sequences:

>Translated_330_residues
MNAVTLPALIQRFFTDRLCTQLEASRHTVAGYRDTFRLLLRYASARRKKPPVNLTVEDIDADLVADFLAHTETARGNSAR
SRNTRLAAIRSFFRFVAMTDPTWLLHCQRILAMPNKRYVKRAVTFLDAEEMAALLAAPDRTTWAGRRDHALLLLAVQTGL
RASELVGLTRGDVVLGTGAHIRCMGKGRKERATPLRRETAKLLATWIGNDKDEGKPLFPSIRGERLSRDALEHLVRKHCL
TASRACPSIGTKQVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRMKEKALARVAAPATPSGRFRPD
DQLLAFLEGL
>Mature_330_residues
MNAVTLPALIQRFFTDRLCTQLEASRHTVAGYRDTFRLLLRYASARRKKPPVNLTVEDIDADLVADFLAHTETARGNSAR
SRNTRLAAIRSFFRFVAMTDPTWLLHCQRILAMPNKRYVKRAVTFLDAEEMAALLAAPDRTTWAGRRDHALLLLAVQTGL
RASELVGLTRGDVVLGTGAHIRCMGKGRKERATPLRRETAKLLATWIGNDKDEGKPLFPSIRGERLSRDALEHLVRKHCL
TASRACPSIGTKQVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRMKEKALARVAAPATPSGRFRPD
DQLLAFLEGL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=297, Percent_Identity=30.976430976431, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1790244, Length=316, Percent_Identity=29.4303797468354, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790768, Length=176, Percent_Identity=32.9545454545455, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36887; Mature: 36887

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVTLPALIQRFFTDRLCTQLEASRHTVAGYRDTFRLLLRYASARRKKPPVNLTVEDID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHCC
ADLVADFLAHTETARGNSARSRNTRLAAIRSFFRFVAMTDPTWLLHCQRILAMPNKRYVK
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
RAVTFLDAEEMAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELVGLTRGDVVLGTGAH
HHHHHHCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCEEEECCCE
IRCMGKGRKERATPLRRETAKLLATWIGNDKDEGKPLFPSIRGERLSRDALEHLVRKHCL
EEEECCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TASRACPSIGTKQVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRMK
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEEECCCCCEEEEEEEEECCHHH
EKALARVAAPATPSGRFRPDDQLLAFLEGL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MNAVTLPALIQRFFTDRLCTQLEASRHTVAGYRDTFRLLLRYASARRKKPPVNLTVEDID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHCC
ADLVADFLAHTETARGNSARSRNTRLAAIRSFFRFVAMTDPTWLLHCQRILAMPNKRYVK
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
RAVTFLDAEEMAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELVGLTRGDVVLGTGAH
HHHHHHCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCEEEECCCE
IRCMGKGRKERATPLRRETAKLLATWIGNDKDEGKPLFPSIRGERLSRDALEHLVRKHCL
EEEECCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TASRACPSIGTKQVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRMK
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEEECCCCCEEEEEEEEECCHHH
EKALARVAAPATPSGRFRPDDQLLAFLEGL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]