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The map label for this gene is xerD [C]

Identifier: 148243781

GI number: 148243781

Start: 175771

End: 176982

Strand: Direct

Name: xerD [C]

Synonym: Acry_3264

Alternate gene names: 148243781

Gene position: 175771-176982 (Clockwise)

Preceding gene: 148243777

Following gene: 148243782

Centisome position: 86.34

GC content: 64.44

Gene sequence:

>1212_bases
ATGCCTCAATATTTGCAGACCTGCATCGAGCCGTATCTGGACTCGTTCGCCGAGAGCTTTGCGGCGGAGAATTACACCGC
CGGCACGGTCAAGACCTACCAATCGATCCTGCGGAAGGTGGGGCACGCGATGGATGTCGAGGGCATCAGTCCTTCGGCGT
TGACGCTCGACATGGCCGAGCATCTGGGACGCAAGGTGCCGCGCAAGAAGACGGGCTCGGTATGGCCGTATAGGTTGGCC
CGCCGGTTCGCGCAGCATCTGCTCGATATCGGCGTCACGCAGCCGGTGCCGTTGACCGAGGCGCAGCAGGCGCGCGCGAC
CCTGCTGGCGAACTTCGAGACCTATCTGGTCAAGCATCGCGGCCTGAGTCCGCGGACGATCTATCACACGCTGCGGTTCG
CCAACCGGTTCCTCGATCATCGCTTTGGTGATGCGATAGTTGATCCGGGGCGGTTGCGGCCTGCCGACGTGATCAGCTTC
ATCGAGCATGTGTTGGCAGGCGCGCGTCGCGACAAAACGGTGGCAACGCATGTTCGTATCTTCCTGCAATATCTGTTCGG
CAGCGGCGCGACAGCGACCAATCTGGCGCTGAGCGTGCCTAGGGCGGCGAAGCGCTGGGGCGCACGACTGCCGCGCCATC
TGTCGCCCGAGGGCGTCGAGGCGGTGCTCGCCTGCGTGCGCGACAGCCCCCGGCACGGCGCTCGGGACTATGCGATGCTG
CTCATCATGGCCCGGCTCGGCTTGCGCGCTGCCGAGGTCATCGCGATCCAGCTGGACGACATCGACTGGCGCGCGGGCGA
ACTCTTGGTGCGTGGCAAGGGGAAGCTCCACGATCGCGTGCCGATCAGCGCGGAGGTTGGCGAGGCCCTCTGCCGCTATC
TGCGCGAGGAACGCGGACCCGCGTCCTGTCGCACGATGTTCGTCACCCATCGCGCGCCGTACCGTCCGTTCAAGGACAGC
CAGATCGTCAACGCCGTTCTCAAGGATGCGCTGAAGGCGACTGGCCAGAAGCCGGTAACGCCCTATGTGGGATCGCACCT
GCTGCGTCATAGCCTTGCCACCCAGTTAGTGAACTCGGGTGCATCGCTCGACGAGGTGGGCGATGTGCTGCGGCACCGCT
CACGCACATCAACGATGATATATGCCCGTCTCGACATCGATGGGCTGCGGTCAGTGGCAATGCCTTGGCCCGTGGCGGGA
GGCGCGCAATGA

Upstream 100 bases:

>100_bases
TTATGCCGCATCTGCTCGGCAGGGCGCGGTTGGCGGTATGATCGCACCAATCCCATTCGGCATAATCTTCATCGCTCCAA
CAACATGGAGCACGACGATC

Downstream 100 bases:

>100_bases
GCCTCACCTTCCAACTCGACCGCTATCTGGCTGTGCGGCGCCGCCTCGGCTACGACCTGAGCACCAGCGAGCGCATCCTT
CGCCGCTTCACGCGGTTCGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MPQYLQTCIEPYLDSFAESFAAENYTAGTVKTYQSILRKVGHAMDVEGISPSALTLDMAEHLGRKVPRKKTGSVWPYRLA
RRFAQHLLDIGVTQPVPLTEAQQARATLLANFETYLVKHRGLSPRTIYHTLRFANRFLDHRFGDAIVDPGRLRPADVISF
IEHVLAGARRDKTVATHVRIFLQYLFGSGATATNLALSVPRAAKRWGARLPRHLSPEGVEAVLACVRDSPRHGARDYAML
LIMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLHDRVPISAEVGEALCRYLREERGPASCRTMFVTHRAPYRPFKDS
QIVNAVLKDALKATGQKPVTPYVGSHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYARLDIDGLRSVAMPWPVAG
GAQ

Sequences:

>Translated_403_residues
MPQYLQTCIEPYLDSFAESFAAENYTAGTVKTYQSILRKVGHAMDVEGISPSALTLDMAEHLGRKVPRKKTGSVWPYRLA
RRFAQHLLDIGVTQPVPLTEAQQARATLLANFETYLVKHRGLSPRTIYHTLRFANRFLDHRFGDAIVDPGRLRPADVISF
IEHVLAGARRDKTVATHVRIFLQYLFGSGATATNLALSVPRAAKRWGARLPRHLSPEGVEAVLACVRDSPRHGARDYAML
LIMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLHDRVPISAEVGEALCRYLREERGPASCRTMFVTHRAPYRPFKDS
QIVNAVLKDALKATGQKPVTPYVGSHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYARLDIDGLRSVAMPWPVAG
GAQ
>Mature_402_residues
PQYLQTCIEPYLDSFAESFAAENYTAGTVKTYQSILRKVGHAMDVEGISPSALTLDMAEHLGRKVPRKKTGSVWPYRLAR
RFAQHLLDIGVTQPVPLTEAQQARATLLANFETYLVKHRGLSPRTIYHTLRFANRFLDHRFGDAIVDPGRLRPADVISFI
EHVLAGARRDKTVATHVRIFLQYLFGSGATATNLALSVPRAAKRWGARLPRHLSPEGVEAVLACVRDSPRHGARDYAMLL
IMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLHDRVPISAEVGEALCRYLREERGPASCRTMFVTHRAPYRPFKDSQ
IVNAVLKDALKATGQKPVTPYVGSHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYARLDIDGLRSVAMPWPVAGG
AQ

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=222, Percent_Identity=30.6306306306306, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44735; Mature: 44604

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQYLQTCIEPYLDSFAESFAAENYTAGTVKTYQSILRKVGHAMDVEGISPSALTLDMAE
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
HLGRKVPRKKTGSVWPYRLARRFAQHLLDIGVTQPVPLTEAQQARATLLANFETYLVKHR
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GLSPRTIYHTLRFANRFLDHRFGDAIVDPGRLRPADVISFIEHVLAGARRDKTVATHVRI
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
FLQYLFGSGATATNLALSVPRAAKRWGARLPRHLSPEGVEAVLACVRDSPRHGARDYAML
HHHHHHCCCCCHHHHHEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
LIMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLHDRVPISAEVGEALCRYLREERGP
HHHHHHCCCEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
ASCRTMFVTHRAPYRPFKDSQIVNAVLKDALKATGQKPVTPYVGSHLLRHSLATQLVNSG
CHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
ASLDEVGDVLRHRSRTSTMIYARLDIDGLRSVAMPWPVAGGAQ
CCHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PQYLQTCIEPYLDSFAESFAAENYTAGTVKTYQSILRKVGHAMDVEGISPSALTLDMAE
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
HLGRKVPRKKTGSVWPYRLARRFAQHLLDIGVTQPVPLTEAQQARATLLANFETYLVKHR
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GLSPRTIYHTLRFANRFLDHRFGDAIVDPGRLRPADVISFIEHVLAGARRDKTVATHVRI
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
FLQYLFGSGATATNLALSVPRAAKRWGARLPRHLSPEGVEAVLACVRDSPRHGARDYAML
HHHHHHCCCCCHHHHHEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
LIMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLHDRVPISAEVGEALCRYLREERGP
HHHHHHCCCEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
ASCRTMFVTHRAPYRPFKDSQIVNAVLKDALKATGQKPVTPYVGSHLLRHSLATQLVNSG
CHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
ASLDEVGDVLRHRSRTSTMIYARLDIDGLRSVAMPWPVAGGAQ
CCHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]