Click here to switch to the map view.

The map label for this gene is yrkH [H]

Identifier: 148243775

GI number: 148243775

Start: 170632

End: 171363

Strand: Direct

Name: yrkH [H]

Synonym: Acry_3258

Alternate gene names: 148243775

Gene position: 170632-171363 (Clockwise)

Preceding gene: 148243771

Following gene: 148243776

Centisome position: 83.81

GC content: 67.62

Gene sequence:

>732_bases
ATGATCCTGCGACAGCTCCTGCACACCGATCCCACGGCGGCCTCCTATCTGCTCGGCTGTGTCGGCAAGGGCGCCGGCGT
GGTCGTCGACACGCTGTTTCCGATCGAACCTTATCTGCACGCCGCCTCGGCCTCCGGCTCGCCGATCCACCTCGTGATCG
ACACGCATCTGCATGCCGATCACCGCTCCGCCGGCCGCGCGCTGGCCGAAGCGGCCGGCGCCGAATACGCCATCCACGAA
TCCGCCGAGGTCTCATATGCGTGCCGCCGCCTCGCAGACGGCGAACGGCTCGAACTCGGCAATGTCGTGCTCGAGGTGCT
GCACACGCCGGGTCACACGCCGGAGCATCTCTGCCTCACGGTGACCGACCGCACCCGCGCGGATGAGCCATGGAGCGTAC
TCGGCGGCCACACGCTCATGGTGGGCGATGTCGGCCGGACCGAACTTGCGACCGACGCCGCGCGCGGCGCGCGCGACCTG
TTCACGAGCCTCGCCCGGCTCAAGGCGCTGCCCGACCATATCGAGGTGCTCCCCGGTGCTCTGGCCGGCTCGGTCTGCGG
CCGAGGTCTCTCCGGCAAACCGGTTTCGACGATCGGCTTCGAACGGCGCCATAATCCCGCTTTCCGGATCGACGATCGGG
AGCAATTTGTCGCATTCATGCTCGAGAATATTCCACCCCCGCCCGAAGGCGCGGCCGAACTGCGTGCGTGGAATTCGGGC
TTCACCGCGTGA

Upstream 100 bases:

>100_bases
GCTGCTTGACTTCATCTTCGACTCATTCAATCAATATCGCGAATGATAATGTGATGGCGCGCTGGCGACAAGATCGCCAC
GTCAGCCGGGAGCAACACTC

Downstream 100 bases:

>100_bases
CCACAGTGACAAACGCCTCGGCTCATATCCGCGGCATCGCGGCCAATCGCTGCCAGTTTACCCTACAGGCGCTACAGGTC
TTCTTCGTCGGTCTTGTCAT

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MILRQLLHTDPTAASYLLGCVGKGAGVVVDTLFPIEPYLHAASASGSPIHLVIDTHLHADHRSAGRALAEAAGAEYAIHE
SAEVSYACRRLADGERLELGNVVLEVLHTPGHTPEHLCLTVTDRTRADEPWSVLGGHTLMVGDVGRTELATDAARGARDL
FTSLARLKALPDHIEVLPGALAGSVCGRGLSGKPVSTIGFERRHNPAFRIDDREQFVAFMLENIPPPPEGAAELRAWNSG
FTA

Sequences:

>Translated_243_residues
MILRQLLHTDPTAASYLLGCVGKGAGVVVDTLFPIEPYLHAASASGSPIHLVIDTHLHADHRSAGRALAEAAGAEYAIHE
SAEVSYACRRLADGERLELGNVVLEVLHTPGHTPEHLCLTVTDRTRADEPWSVLGGHTLMVGDVGRTELATDAARGARDL
FTSLARLKALPDHIEVLPGALAGSVCGRGLSGKPVSTIGFERRHNPAFRIDDREQFVAFMLENIPPPPEGAAELRAWNSG
FTA
>Mature_243_residues
MILRQLLHTDPTAASYLLGCVGKGAGVVVDTLFPIEPYLHAASASGSPIHLVIDTHLHADHRSAGRALAEAAGAEYAIHE
SAEVSYACRRLADGERLELGNVVLEVLHTPGHTPEHLCLTVTDRTRADEPWSVLGGHTLMVGDVGRTELATDAARGARDL
FTSLARLKALPDHIEVLPGALAGSVCGRGLSGKPVSTIGFERRHNPAFRIDDREQFVAFMLENIPPPPEGAAELRAWNSG
FTA

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1787158, Length=215, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538952, Length=226, Percent_Identity=27.4336283185841, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221330176, Length=245, Percent_Identity=27.7551020408163, Blast_Score=84, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 25940; Mature: 25940

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRQLLHTDPTAASYLLGCVGKGAGVVVDTLFPIEPYLHAASASGSPIHLVIDTHLHAD
CHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCEEEEEECCCCCC
HRSAGRALAEAAGAEYAIHESAEVSYACRRLADGERLELGNVVLEVLHTPGHTPEHLCLT
HHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCEEEE
VTDRTRADEPWSVLGGHTLMVGDVGRTELATDAARGARDLFTSLARLKALPDHIEVLPGA
EECCCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LAGSVCGRGLSGKPVSTIGFERRHNPAFRIDDREQFVAFMLENIPPPPEGAAELRAWNSG
HHHHHHCCCCCCCCCHHHCCHHCCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHCCCC
FTA
CCC
>Mature Secondary Structure
MILRQLLHTDPTAASYLLGCVGKGAGVVVDTLFPIEPYLHAASASGSPIHLVIDTHLHAD
CHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCEEEEEECCCCCC
HRSAGRALAEAAGAEYAIHESAEVSYACRRLADGERLELGNVVLEVLHTPGHTPEHLCLT
HHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCEEEE
VTDRTRADEPWSVLGGHTLMVGDVGRTELATDAARGARDLFTSLARLKALPDHIEVLPGA
EECCCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LAGSVCGRGLSGKPVSTIGFERRHNPAFRIDDREQFVAFMLENIPPPPEGAAELRAWNSG
HHHHHHCCCCCCCCCHHHCCHHCCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHCCCC
FTA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]