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The map label for this gene is yciR [C]

Identifier: 148243771

GI number: 148243771

Start: 163559

End: 165421

Strand: Direct

Name: yciR [C]

Synonym: Acry_3252

Alternate gene names: 148243771

Gene position: 163559-165421 (Clockwise)

Preceding gene: 148243770

Following gene: 148243775

Centisome position: 80.34

GC content: 70.05

Gene sequence:

>1863_bases
ATGGATCAGGCCGAAACGCTCGATCGCGCCGCGGTCGAGGCCCTGTGCGAGGCGATGTGTGGCGTTGTCTCCGGCGACCT
GTCGGTGCGGCTGCGGACGGCGAGCGCGGACCTGACGGTCCAGAAGCTGTCGCTGCTCGCGAATTTCATGCTGGAGACCG
CCCAGCGCGCGGTGGAGCGCAGCCTGGCCTATGCCGGGGCACTCGACAACGTGCAGCGCATCGCACGGCTTTCGGCCTGG
CAACTGGTGTTGCCTGACCAAGAGGTCGTGCCGGTCGGCACCGCGGCGGGCCTGCCGGATGCGGCGGCCGCGCCGCTGCA
GGGGACCGCTTGGTTCCTCGACCGCGTGGGCCCGGGCTGTCGTGCCGCGATGGCCGCCCTGTTCCAGGGCGATGGCGGGA
CGCTCGAATGGCTGGCGGCGGATGGCGAGGCCTGGTTCCGCACCGAGGTCGCCGCCTTGCGCGACGAGGGCAGGCTCGCG
GGGTATCTCGTGATCACCCAGGACATCTCCGAGCGCCGGCGGGCGACCGAGCGCATCCGCTATCTCGCCGAGCACGACCC
GCTGACCGGGCTCGCCAACCGGAGACGGCTGCACGAGCAACTCGAAGGGGAACTCGAGGCCGGCCGCCGGCAGGGTACGA
AATTCGCGGTCCATGTCATCGATGTCGACCGATTCAAGACGGTGAACGACCTGTTCGGCCATGCCGCGGGCGACCGGCTG
CTGGTCGATCTCGCCACCTGCCTGCGGCAGGAAGCGCGGGAAAGCGACATGATCGCCCGCATCGGCGGCGACGAATTCGT
CGTCCTGCAAGTCGGGATCGGCGACGCGCGGGACGCCGGGGCGCTGGCCGGGCGGCTGGTCGGGGCGGTGAGCGCGCGGC
TCGCCGAGCCCGGCGCGCGCGCGCTGGCGGCGACGGTCTCGATCGGCATCGCGCTGGCGCCAGATGACGGCACGACCGCC
GAGGCCCTGCTCTCGCATGCCGACATGGCGCTCTACCAGGTGAAGTCGACCGGACGGAACGGCTTCGCCTTCTTCAACAC
CGAGATCAACGAGGCCCAGCTCGCCCGTCGGCGGATGGAGGCGGAACTGCGCGGCGCCTGCGAGCGAGGCGAAATGGCGG
TGCACTACCAGCCACTGTTCGAGATCGCGTCCGACCGGGTCGTCGGGTTCGAGGCGCTGGTACGCTGGCGGCGGGACGGC
GAGGACGTCTCGCCGGCCGTGTTCATCCCGATCGCCGAGGAGTCGGGCAGCATCATCGAGATCGGCCGCTTCGTGCTGCG
CGAGGCGTGCCGCGAGGCAGCGGGCTGGCCGGTAAAGTTGCGCGTCGCCGTCAATATCTCGGCGCTGCAGATCCAGGACG
GCGGGCTGCCCGATCTTGTCGCCACCGTGCTGGAGGAGACCGGTCTGGAGGCCGGGCGGCTCGAACTCGAGGTGACCGAG
TCGCTGCTGCTCGCCAATGCCGAGGCGGCGACCGAGGTGCTCGCGCGGATCAGGGCGCTGGGGGTGACGATCTCGCTCGA
CGATTTCGGCACCGGCTATTCCTCGCTGGCGACGCTGCGGATGTTCCCCTTCGACAAGATCAAGCTCGACCGCTCCTTCG
TCAATGATCTCGGGCGGCTCGGCGAGGCGGAGGCGATCGTGATGGCGGTGCTCGGGCTCGGCCGCGCGCTCGACGTCTCG
GTGGTCGCGGAGGGGGTGGAAACTGAGGAACAGGCCGCCATGCTGCGCGCGGCAGGATGCTCGCTGCTGCAGGGCTACCT
GATCGGCCGACCGGCACCGATCGCCCGGTTCAGCGCGGAGGTCGGCCGCGACGTTACGAGCAGGATGACGAAAACACCGA
TACCTGCGGATTCGCCTGGTTAG

Upstream 100 bases:

>100_bases
GGGGCGAGGTGGCCGAGATCAGCTTTCTCGACGGCGATGTCGGCTCGGCCGCCGCGATCATCGAGGTGAGGCTGAAACCG
GCGCTGGCGGCCTGACGCGC

Downstream 100 bases:

>100_bases
GCAACCCGGGCCAGCTAGGCTGATAGCTCATTAGCTTGACATAGGCTTCGAACTGATCGTCGTTGCGCGAATCGGTCATG
CACAAGCTGGCGACCAAAGG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 620; Mature: 620

Protein sequence:

>620_residues
MDQAETLDRAAVEALCEAMCGVVSGDLSVRLRTASADLTVQKLSLLANFMLETAQRAVERSLAYAGALDNVQRIARLSAW
QLVLPDQEVVPVGTAAGLPDAAAAPLQGTAWFLDRVGPGCRAAMAALFQGDGGTLEWLAADGEAWFRTEVAALRDEGRLA
GYLVITQDISERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELEAGRRQGTKFAVHVIDVDRFKTVNDLFGHAAGDRL
LVDLATCLRQEARESDMIARIGGDEFVVLQVGIGDARDAGALAGRLVGAVSARLAEPGARALAATVSIGIALAPDDGTTA
EALLSHADMALYQVKSTGRNGFAFFNTEINEAQLARRRMEAELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRRDG
EDVSPAVFIPIAEESGSIIEIGRFVLREACREAAGWPVKLRVAVNISALQIQDGGLPDLVATVLEETGLEAGRLELEVTE
SLLLANAEAATEVLARIRALGVTISLDDFGTGYSSLATLRMFPFDKIKLDRSFVNDLGRLGEAEAIVMAVLGLGRALDVS
VVAEGVETEEQAAMLRAAGCSLLQGYLIGRPAPIARFSAEVGRDVTSRMTKTPIPADSPG

Sequences:

>Translated_620_residues
MDQAETLDRAAVEALCEAMCGVVSGDLSVRLRTASADLTVQKLSLLANFMLETAQRAVERSLAYAGALDNVQRIARLSAW
QLVLPDQEVVPVGTAAGLPDAAAAPLQGTAWFLDRVGPGCRAAMAALFQGDGGTLEWLAADGEAWFRTEVAALRDEGRLA
GYLVITQDISERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELEAGRRQGTKFAVHVIDVDRFKTVNDLFGHAAGDRL
LVDLATCLRQEARESDMIARIGGDEFVVLQVGIGDARDAGALAGRLVGAVSARLAEPGARALAATVSIGIALAPDDGTTA
EALLSHADMALYQVKSTGRNGFAFFNTEINEAQLARRRMEAELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRRDG
EDVSPAVFIPIAEESGSIIEIGRFVLREACREAAGWPVKLRVAVNISALQIQDGGLPDLVATVLEETGLEAGRLELEVTE
SLLLANAEAATEVLARIRALGVTISLDDFGTGYSSLATLRMFPFDKIKLDRSFVNDLGRLGEAEAIVMAVLGLGRALDVS
VVAEGVETEEQAAMLRAAGCSLLQGYLIGRPAPIARFSAEVGRDVTSRMTKTPIPADSPG
>Mature_620_residues
MDQAETLDRAAVEALCEAMCGVVSGDLSVRLRTASADLTVQKLSLLANFMLETAQRAVERSLAYAGALDNVQRIARLSAW
QLVLPDQEVVPVGTAAGLPDAAAAPLQGTAWFLDRVGPGCRAAMAALFQGDGGTLEWLAADGEAWFRTEVAALRDEGRLA
GYLVITQDISERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELEAGRRQGTKFAVHVIDVDRFKTVNDLFGHAAGDRL
LVDLATCLRQEARESDMIARIGGDEFVVLQVGIGDARDAGALAGRLVGAVSARLAEPGARALAATVSIGIALAPDDGTTA
EALLSHADMALYQVKSTGRNGFAFFNTEINEAQLARRRMEAELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRRDG
EDVSPAVFIPIAEESGSIIEIGRFVLREACREAAGWPVKLRVAVNISALQIQDGGLPDLVATVLEETGLEAGRLELEVTE
SLLLANAEAATEVLARIRALGVTISLDDFGTGYSSLATLRMFPFDKIKLDRSFVNDLGRLGEAEAIVMAVLGLGRALDVS
VVAEGVETEEQAAMLRAAGCSLLQGYLIGRPAPIARFSAEVGRDVTSRMTKTPIPADSPG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=437, Percent_Identity=37.9862700228833, Blast_Score=288, Evalue=8e-79,
Organism=Escherichia coli, GI87081921, Length=431, Percent_Identity=34.5707656612529, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI226510982, Length=450, Percent_Identity=32.4444444444444, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1788502, Length=259, Percent_Identity=33.2046332046332, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=30.8300395256917, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=31.0483870967742, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=34.5833333333333, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=35.7142857142857, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=32.520325203252, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1786507, Length=275, Percent_Identity=31.2727272727273, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1788381, Length=449, Percent_Identity=27.1714922048998, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=33.75, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87082096, Length=237, Percent_Identity=31.2236286919831, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=35.7541899441341, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=186, Percent_Identity=32.258064516129, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=32.9479768786127, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=36.6459627329193, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=186, Percent_Identity=31.7204301075269, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787410, Length=220, Percent_Identity=25.4545454545455, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=30.9782608695652, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=32.1212121212121, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=31.7073170731707, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=31.3725490196078, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1789650, Length=421, Percent_Identity=22.5653206650831, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=86, Percent_Identity=39.5348837209302, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 66451; Mature: 66451

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQAETLDRAAVEALCEAMCGVVSGDLSVRLRTASADLTVQKLSLLANFMLETAQRAVER
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
SLAYAGALDNVQRIARLSAWQLVLPDQEVVPVGTAAGLPDAAAAPLQGTAWFLDRVGPGC
HHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCH
RAAMAALFQGDGGTLEWLAADGEAWFRTEVAALRDEGRLAGYLVITQDISERRRATERIR
HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHH
YLAEHDPLTGLANRRRLHEQLEGELEAGRRQGTKFAVHVIDVDRFKTVNDLFGHAAGDRL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHCCCCCCHH
LVDLATCLRQEARESDMIARIGGDEFVVLQVGIGDARDAGALAGRLVGAVSARLAEPGAR
HHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
ALAATVSIGIALAPDDGTTAEALLSHADMALYQVKSTGRNGFAFFNTEINEAQLARRRME
HHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCHHHHHHHHHH
AELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRRDGEDVSPAVFIPIAEESGSIIE
HHHHCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHH
IGRFVLREACREAAGWPVKLRVAVNISALQIQDGGLPDLVATVLEETGLEAGRLELEVTE
HHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEHH
SLLLANAEAATEVLARIRALGVTISLDDFGTGYSSLATLRMFPFDKIKLDRSFVNDLGRL
HHHHHCHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHCC
GEAEAIVMAVLGLGRALDVSVVAEGVETEEQAAMLRAAGCSLLQGYLIGRPAPIARFSAE
CCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VGRDVTSRMTKTPIPADSPG
HCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDQAETLDRAAVEALCEAMCGVVSGDLSVRLRTASADLTVQKLSLLANFMLETAQRAVER
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
SLAYAGALDNVQRIARLSAWQLVLPDQEVVPVGTAAGLPDAAAAPLQGTAWFLDRVGPGC
HHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCH
RAAMAALFQGDGGTLEWLAADGEAWFRTEVAALRDEGRLAGYLVITQDISERRRATERIR
HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHH
YLAEHDPLTGLANRRRLHEQLEGELEAGRRQGTKFAVHVIDVDRFKTVNDLFGHAAGDRL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHCCCCCCHH
LVDLATCLRQEARESDMIARIGGDEFVVLQVGIGDARDAGALAGRLVGAVSARLAEPGAR
HHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
ALAATVSIGIALAPDDGTTAEALLSHADMALYQVKSTGRNGFAFFNTEINEAQLARRRME
HHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCHHHHHHHHHH
AELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRRDGEDVSPAVFIPIAEESGSIIE
HHHHCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHH
IGRFVLREACREAAGWPVKLRVAVNISALQIQDGGLPDLVATVLEETGLEAGRLELEVTE
HHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEHH
SLLLANAEAATEVLARIRALGVTISLDDFGTGYSSLATLRMFPFDKIKLDRSFVNDLGRL
HHHHHCHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHCC
GEAEAIVMAVLGLGRALDVSVVAEGVETEEQAAMLRAAGCSLLQGYLIGRPAPIARFSAE
CCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VGRDVTSRMTKTPIPADSPG
HCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]