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The map label for this gene is ydfH [C]

Identifier: 146343745

GI number: 146343745

Start: 7288703

End: 7289437

Strand: Direct

Name: ydfH [C]

Synonym: BRADO6992

Alternate gene names: 146343745

Gene position: 7288703-7289437 (Clockwise)

Preceding gene: 146343739

Following gene: 146343748

Centisome position: 97.75

GC content: 69.8

Gene sequence:

>735_bases
ATGGCCCCGCCCGCGACGCCACCCGACATCCCGCCCGACATGCCGCCGAGGGCCCCTCCGCCTGAACGGCTCGACCCGAG
CCGGCGCGCGGCGCCGCAGGTGTTCGAAAGGCTGCGCGATCAGATCATCTCACTGGCGCTCCCCCCGGGCTCGCCCTTGT
CGCGGACGTCCCTGCAAGCCGAGTTCGGGCTGAGCTCGACGCCGATCCGGGACGCGCTGATGCGGCTTGCCGAGGAGGGC
CTGGTCGACATCTTCCCGCAGCATGCGACGCTGGTGAGCCGCATCGATATCGGCCGGGCGCAGCAGGCGCAATTCCTGCG
GCAAGCGCTGGAGCTGGAGATCGTGCGGCTGCTGGCACGCGAGCCCGTGCAGACTCTCGCGGACGAGCTCTACGGGCTGG
TGGCTCAGCAGCGACGCTTCGCCAGGGATGGCGATTTCGCCGCCTTCATGCTGGCCGACAACGCCTTCCACGAGCGTCTC
TACACAGCCGCAAACAAGCACGAGCTTTGGACCCTGGTGCGCAGCCGCAGCGGCCACATCGACCGGCTGCGCCGGCTGCA
TCTGCCGTCGCCGGGCAAGGCACAGACCATCCTGCGCCACCACAAGCAGATCGTCGACGCGATCGCCGCCGGACGGCCCG
ACGAGGCGCAGGCGCATTTGCGCGAGCATCTGACCGGCACGCTCAGCGACCTCGCCACCATCCGCAGCCGCTGGCCCGAC
TATCTCAGCGGATAG

Upstream 100 bases:

>100_bases
GTTCTTGACGGCCGGTCACCCGATGCACTAATGCATTAGTTTATCTCTGACAAGTGCCGCGATCGCTGCGTGCGACATTT
CAGCAGGACGTCCGCTCCTC

Downstream 100 bases:

>100_bases
AGCGGAGCAGGCAAGATCATCACGCCGCCTGGTTGCGCCTCTGGCGGGCAGCGCGGCGCTCCGGTCCCCGATAGTTCGGA
TCATCCTCGACCCGGCGGTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MAPPATPPDIPPDMPPRAPPPERLDPSRRAAPQVFERLRDQIISLALPPGSPLSRTSLQAEFGLSSTPIRDALMRLAEEG
LVDIFPQHATLVSRIDIGRAQQAQFLRQALELEIVRLLAREPVQTLADELYGLVAQQRRFARDGDFAAFMLADNAFHERL
YTAANKHELWTLVRSRSGHIDRLRRLHLPSPGKAQTILRHHKQIVDAIAAGRPDEAQAHLREHLTGTLSDLATIRSRWPD
YLSG

Sequences:

>Translated_244_residues
MAPPATPPDIPPDMPPRAPPPERLDPSRRAAPQVFERLRDQIISLALPPGSPLSRTSLQAEFGLSSTPIRDALMRLAEEG
LVDIFPQHATLVSRIDIGRAQQAQFLRQALELEIVRLLAREPVQTLADELYGLVAQQRRFARDGDFAAFMLADNAFHERL
YTAANKHELWTLVRSRSGHIDRLRRLHLPSPGKAQTILRHHKQIVDAIAAGRPDEAQAHLREHLTGTLSDLATIRSRWPD
YLSG
>Mature_243_residues
APPATPPDIPPDMPPRAPPPERLDPSRRAAPQVFERLRDQIISLALPPGSPLSRTSLQAEFGLSSTPIRDALMRLAEEGL
VDIFPQHATLVSRIDIGRAQQAQFLRQALELEIVRLLAREPVQTLADELYGLVAQQRRFARDGDFAAFMLADNAFHERLY
TAANKHELWTLVRSRSGHIDRLRRLHLPSPGKAQTILRHHKQIVDAIAAGRPDEAQAHLREHLTGTLSDLATIRSRWPDY
LSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=221, Percent_Identity=26.6968325791855, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27327; Mature: 27195

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPPATPPDIPPDMPPRAPPPERLDPSRRAAPQVFERLRDQIISLALPPGSPLSRTSLQA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
EFGLSSTPIRDALMRLAEEGLVDIFPQHATLVSRIDIGRAQQAQFLRQALELEIVRLLAR
HCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
EPVQTLADELYGLVAQQRRFARDGDFAAFMLADNAFHERLYTAANKHELWTLVRSRSGHI
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHH
DRLRRLHLPSPGKAQTILRHHKQIVDAIAAGRPDEAQAHLREHLTGTLSDLATIRSRWPD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
YLSG
HCCC
>Mature Secondary Structure 
APPATPPDIPPDMPPRAPPPERLDPSRRAAPQVFERLRDQIISLALPPGSPLSRTSLQA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
EFGLSSTPIRDALMRLAEEGLVDIFPQHATLVSRIDIGRAQQAQFLRQALELEIVRLLAR
HCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
EPVQTLADELYGLVAQQRRFARDGDFAAFMLADNAFHERLYTAANKHELWTLVRSRSGHI
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHH
DRLRRLHLPSPGKAQTILRHHKQIVDAIAAGRPDEAQAHLREHLTGTLSDLATIRSRWPD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
YLSG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]