| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is lolC [C]
Identifier: 146343626
GI number: 146343626
Start: 7130051
End: 7132513
Strand: Direct
Name: lolC [C]
Synonym: BRADO6865
Alternate gene names: 146343626
Gene position: 7130051-7132513 (Clockwise)
Preceding gene: 146343625
Following gene: 146343627
Centisome position: 95.62
GC content: 69.96
Gene sequence:
>2463_bases ATGAGACGCGCGGTGTGGATCCTCGCCGTGCTGCTCAGCCACTGGCGGCGGCATCCGATGCAGCTCGCGACCTTGCTGAT CGGCCTGATCTCGGCCACCGCGCTGTGGAGCGGCGTGCAGGCGCTGAACCAGCAGGCGCGCAGCTCCTATGATCGCGCCG CGGCGATCTTCGGCGGCGCGCGCACGCCGATGCTGGTCGCCAAGGACGGCAAGATGCTGCCGCAAAGCGTGTTCGCCGCC TTGCGCCGCGCCGGCTGGCCGGTGTCGCCGGTCGTCGAGGGTCGCGTGCAGATCGATGGCCGCTCGATCCGGCTGCTCGG CATCGAGCCGTTCAGCATTCCCAAGGAGGTCGGCGATGCGCCGACGGTCGGCCGCAGCGAGCTCGAGGCGTTCCTGACGC CGCCGCACCGGACGCTGATCTCGCCGGAGACGCTGGCCGAAATCGGACTCAAGGACGGCGCGACGCCGCGACTCAGCAAC GACGCGGTGCTGCCGCCGCTGATGGCGCAACAGCAGCTCGCGCCCGGCGTGCTCGTTGTCGACATCAGCGACGCGCAACG GCTGCTCGACAAGCCCGGCCAGATCTCGCGGCTCTTGCTCGGCAAGACGACCGCGCAGCGCGCGCCGTTGCAGAGTTTTG CGGACGGCCGCCTGCAGCTGGTGCAGCCGGAGGCCGAGACCGATCTGGAGCGGCTGACCGACAGCTTCCATCTCAACCTC ACCGCGTTCGGCCTGCTGTCCTTCGTCGTCGGCCTGTTCATCGTCAACTCCGCGATCGGCCTCGCCTTCGAGCAGCGGCT GCCGGTGCTGCGCACCTTGCGCGCCTGCGGCGTGTCGGCGCGTCAGCTCAACGCCGTGCTGATCGGCGAGCTCATCGCGT TCGCCCTGGTCGCGGGCATCGTCGGCCTGGTCTGCGGCTATGTCATCGCAGCGACGCTGCTGCCGAACGTCGCCGCGTCC TTGCGTGGGCTCTACGGCGCGCAGGTGCCGGGCGAGCTGAGCCTGCGGCCGGAATGGTGGCTCGCGGGCCTTGTCATCAG CGTGGCCGGCGCGCTCGCGGCCGCCACCACCAGCCTGGTCAAATCGATGCGGCTGCCGATCCTCTCGACTGCGCAGCCTT ACGCGTGGCAGGAGGCGCAGCGGCGCTGGCTGCGGCTGCAGAGCGCGGTCGCGCTCGCCTTCTTCGTCGCCGCCGGGCTG CTGCTGTGGCTCGGGCAGTCGCTGCTCGCCGGCTTCGGCGTGCTCGCGGCGATGATGCTCGGCGCCGCGCTGCTGCTGCC CGCGATTCTCGAATTCGTGCTGCGGCTCGGCGAGCACGGCGCGCGGGCGGCGCTGGCGCAATGGTTCTGGGCCGACAGCC GGCAGCAGATCTCGGGCCTGTCGCTGGCGCTGATGGCGCTGCTGCTGGCGCTCGCCGTCAATGTCGGCGTGGCGACGATG GTAGAGACGTTCAGCCGCACCTTCCTGGTCTGGCTCGATGGCCGGCTCGCCGCCGACATCTATATCAGTGCGGCCGATGA AGCGCAGGCGCGCGACATTCAGGGGTGGCTGCGCACGCGGCCCGAGGTGCAAGCGGTGTTGCCGGGCGGCCGCGCCGAAA CGCAACTGTCGGGCGCGCCGATCGATGTGCTCGGCCTGCCCGATCACGACACGTATCGCGAGCACTGGCCGCTGCTACAG GCCGGCCCCGATGCGTGGAAGCAGCTGGTGCGAGGCGATGCCGGCTTCGTCAGCGAGCAGCTGGCCCGGCGGCTCAATCT CTCGCTCGGCGACGCCATCGACATCCCCGCACCGGCCGGCGACTGGCACATCACGGTGGCCGGCATCTACGCCGACTACG GCAATCCGAAGGGCCAGGTCACCGTGAACGTCGCCGCGCTGACGCGGCGTTTTCCGGCGACGCCGATCACGCGGATGGCG GTGCGCGCAGCGCCCGCCGACGTGCCCAGACTGATCGCTGATCTCGGCGAGAAGTTCGGCCTCGACGGCCGCAACGTCGT CGACCAGGCCAACATCAAGCAGGAGTCCAAGCAGATCTTCAACCGCACCTTTGCGGTGACCGGCGCGCTCAACACCTTTA CGCTCGGTGTCGCCGCGATCGCCCTGCTGACGAGTCTGCTGACCTTGGCGAACTCCCGCCTGCCGCAACTCGCACCTTTA TGGGCGATCGGCCTCACGCGCCGCCGCCTTGCCGAGGTCGAACTGCTGAAGACGCTGTCGCTGGCCGGCCTCACCGCGCT GCTGGCGCTGCCGCTCGGGCTGGTCGTGGCTTGGTGCCTGATCGCGATCGTCAACGTCAAGGCGTTCGGCTGGCGGCTGC CGTTCGACGTGTTTCCGCTGCAGCTGATCCGGCTGTTGATCGTCACGCTCGCCGCCGCGCTGGTCGCCTCGCTGCTGCCC GTGCTCAGGCTGGCGCGGATGCAGCCGGCGCAGCTCGTGAGGACCTTCACCATTGAGCGCTAG
Upstream 100 bases:
>100_bases TCGTCGCGCGCACCGGCTGCGGCTTCCTGATGGTGACGCATAGCGCACGGCTCGCGGCGATGCTCGACCGCCACGTCCAT CTGCATGCGGGCCGCGTCGC
Downstream 100 bases:
>100_bases AGCCACATTCACCCGACGCGGGCTGATCGGCTTGCTGGGCCTGCTGGCGCTGCCGCGGCTCGCCCGGGCGCAGGGCTTTG CGGGTCTTGCCGACAGCGGC
Product: ABC transporter permease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 820; Mature: 820
Protein sequence:
>820_residues MRRAVWILAVLLSHWRRHPMQLATLLIGLISATALWSGVQALNQQARSSYDRAAAIFGGARTPMLVAKDGKMLPQSVFAA LRRAGWPVSPVVEGRVQIDGRSIRLLGIEPFSIPKEVGDAPTVGRSELEAFLTPPHRTLISPETLAEIGLKDGATPRLSN DAVLPPLMAQQQLAPGVLVVDISDAQRLLDKPGQISRLLLGKTTAQRAPLQSFADGRLQLVQPEAETDLERLTDSFHLNL TAFGLLSFVVGLFIVNSAIGLAFEQRLPVLRTLRACGVSARQLNAVLIGELIAFALVAGIVGLVCGYVIAATLLPNVAAS LRGLYGAQVPGELSLRPEWWLAGLVISVAGALAAATTSLVKSMRLPILSTAQPYAWQEAQRRWLRLQSAVALAFFVAAGL LLWLGQSLLAGFGVLAAMMLGAALLLPAILEFVLRLGEHGARAALAQWFWADSRQQISGLSLALMALLLALAVNVGVATM VETFSRTFLVWLDGRLAADIYISAADEAQARDIQGWLRTRPEVQAVLPGGRAETQLSGAPIDVLGLPDHDTYREHWPLLQ AGPDAWKQLVRGDAGFVSEQLARRLNLSLGDAIDIPAPAGDWHITVAGIYADYGNPKGQVTVNVAALTRRFPATPITRMA VRAAPADVPRLIADLGEKFGLDGRNVVDQANIKQESKQIFNRTFAVTGALNTFTLGVAAIALLTSLLTLANSRLPQLAPL WAIGLTRRRLAEVELLKTLSLAGLTALLALPLGLVVAWCLIAIVNVKAFGWRLPFDVFPLQLIRLLIVTLAAALVASLLP VLRLARMQPAQLVRTFTIER
Sequences:
>Translated_820_residues MRRAVWILAVLLSHWRRHPMQLATLLIGLISATALWSGVQALNQQARSSYDRAAAIFGGARTPMLVAKDGKMLPQSVFAA LRRAGWPVSPVVEGRVQIDGRSIRLLGIEPFSIPKEVGDAPTVGRSELEAFLTPPHRTLISPETLAEIGLKDGATPRLSN DAVLPPLMAQQQLAPGVLVVDISDAQRLLDKPGQISRLLLGKTTAQRAPLQSFADGRLQLVQPEAETDLERLTDSFHLNL TAFGLLSFVVGLFIVNSAIGLAFEQRLPVLRTLRACGVSARQLNAVLIGELIAFALVAGIVGLVCGYVIAATLLPNVAAS LRGLYGAQVPGELSLRPEWWLAGLVISVAGALAAATTSLVKSMRLPILSTAQPYAWQEAQRRWLRLQSAVALAFFVAAGL LLWLGQSLLAGFGVLAAMMLGAALLLPAILEFVLRLGEHGARAALAQWFWADSRQQISGLSLALMALLLALAVNVGVATM VETFSRTFLVWLDGRLAADIYISAADEAQARDIQGWLRTRPEVQAVLPGGRAETQLSGAPIDVLGLPDHDTYREHWPLLQ AGPDAWKQLVRGDAGFVSEQLARRLNLSLGDAIDIPAPAGDWHITVAGIYADYGNPKGQVTVNVAALTRRFPATPITRMA VRAAPADVPRLIADLGEKFGLDGRNVVDQANIKQESKQIFNRTFAVTGALNTFTLGVAAIALLTSLLTLANSRLPQLAPL WAIGLTRRRLAEVELLKTLSLAGLTALLALPLGLVVAWCLIAIVNVKAFGWRLPFDVFPLQLIRLLIVTLAAALVASLLP VLRLARMQPAQLVRTFTIER >Mature_820_residues MRRAVWILAVLLSHWRRHPMQLATLLIGLISATALWSGVQALNQQARSSYDRAAAIFGGARTPMLVAKDGKMLPQSVFAA LRRAGWPVSPVVEGRVQIDGRSIRLLGIEPFSIPKEVGDAPTVGRSELEAFLTPPHRTLISPETLAEIGLKDGATPRLSN DAVLPPLMAQQQLAPGVLVVDISDAQRLLDKPGQISRLLLGKTTAQRAPLQSFADGRLQLVQPEAETDLERLTDSFHLNL TAFGLLSFVVGLFIVNSAIGLAFEQRLPVLRTLRACGVSARQLNAVLIGELIAFALVAGIVGLVCGYVIAATLLPNVAAS LRGLYGAQVPGELSLRPEWWLAGLVISVAGALAAATTSLVKSMRLPILSTAQPYAWQEAQRRWLRLQSAVALAFFVAAGL LLWLGQSLLAGFGVLAAMMLGAALLLPAILEFVLRLGEHGARAALAQWFWADSRQQISGLSLALMALLLALAVNVGVATM VETFSRTFLVWLDGRLAADIYISAADEAQARDIQGWLRTRPEVQAVLPGGRAETQLSGAPIDVLGLPDHDTYREHWPLLQ AGPDAWKQLVRGDAGFVSEQLARRLNLSLGDAIDIPAPAGDWHITVAGIYADYGNPKGQVTVNVAALTRRFPATPITRMA VRAAPADVPRLIADLGEKFGLDGRNVVDQANIKQESKQIFNRTFAVTGALNTFTLGVAAIALLTSLLTLANSRLPQLAPL WAIGLTRRRLAEVELLKTLSLAGLTALLALPLGLVVAWCLIAIVNVKAFGWRLPFDVFPLQLIRLLIVTLAAALVASLLP VLRLARMQPAQLVRTFTIER
Specific function: Part Of An ATP-Dependent Transport System Lolcde Responsible For The Release Of Lipoproteins Targeted To The Outer Membrane From The Inner Membrane. Such A Release Is Dependent Of The Sorting-Signal (Absence Of An Asp At Position 2 Of The Mature Lipoprot
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88199; Mature: 88199
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRAVWILAVLLSHWRRHPMQLATLLIGLISATALWSGVQALNQQARSSYDRAAAIFGGA CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RTPMLVAKDGKMLPQSVFAALRRAGWPVSPVVEGRVQIDGRSIRLLGIEPFSIPKEVGDA CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHCCCC PTVGRSELEAFLTPPHRTLISPETLAEIGLKDGATPRLSNDAVLPPLMAQQQLAPGVLVV CCCCHHHHHHHCCCCCHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEE DISDAQRLLDKPGQISRLLLGKTTAQRAPLQSFADGRLQLVQPEAETDLERLTDSFHLNL ECHHHHHHHCCCCHHHHHHHHCCHHHHCCHHHHCCCCEEEECCCHHHHHHHHHHHHCCHH TAFGLLSFVVGLFIVNSAIGLAFEQRLPVLRTLRACGVSARQLNAVLIGELIAFALVAGI HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VGLVCGYVIAATLLPNVAASLRGLYGAQVPGELSLRPEWWLAGLVISVAGALAAATTSLV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KSMRLPILSTAQPYAWQEAQRRWLRLQSAVALAFFVAAGLLLWLGQSLLAGFGVLAAMML HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAALLLPAILEFVLRLGEHGARAALAQWFWADSRQQISGLSLALMALLLALAVNVGVATM HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VETFSRTFLVWLDGRLAADIYISAADEAQARDIQGWLRTRPEVQAVLPGGRAETQLSGAP HHHHHCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC IDVLGLPDHDTYREHWPLLQAGPDAWKQLVRGDAGFVSEQLARRLNLSLGDAIDIPAPAG EEEEECCCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC DWHITVAGIYADYGNPKGQVTVNVAALTRRFPATPITRMAVRAAPADVPRLIADLGEKFG CCEEEEEEEEECCCCCCCEEEEEHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC LDGRNVVDQANIKQESKQIFNRTFAVTGALNTFTLGVAAIALLTSLLTLANSRLPQLAPL CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH WAIGLTRRRLAEVELLKTLSLAGLTALLALPLGLVVAWCLIAIVNVKAFGWRLPFDVFPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QLIRLLIVTLAAALVASLLPVLRLARMQPAQLVRTFTIER HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC >Mature Secondary Structure MRRAVWILAVLLSHWRRHPMQLATLLIGLISATALWSGVQALNQQARSSYDRAAAIFGGA CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RTPMLVAKDGKMLPQSVFAALRRAGWPVSPVVEGRVQIDGRSIRLLGIEPFSIPKEVGDA CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCCCCHHHCCCC PTVGRSELEAFLTPPHRTLISPETLAEIGLKDGATPRLSNDAVLPPLMAQQQLAPGVLVV CCCCHHHHHHHCCCCCHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEE DISDAQRLLDKPGQISRLLLGKTTAQRAPLQSFADGRLQLVQPEAETDLERLTDSFHLNL ECHHHHHHHCCCCHHHHHHHHCCHHHHCCHHHHCCCCEEEECCCHHHHHHHHHHHHCCHH TAFGLLSFVVGLFIVNSAIGLAFEQRLPVLRTLRACGVSARQLNAVLIGELIAFALVAGI HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VGLVCGYVIAATLLPNVAASLRGLYGAQVPGELSLRPEWWLAGLVISVAGALAAATTSLV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KSMRLPILSTAQPYAWQEAQRRWLRLQSAVALAFFVAAGLLLWLGQSLLAGFGVLAAMML HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAALLLPAILEFVLRLGEHGARAALAQWFWADSRQQISGLSLALMALLLALAVNVGVATM HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VETFSRTFLVWLDGRLAADIYISAADEAQARDIQGWLRTRPEVQAVLPGGRAETQLSGAP HHHHHCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC IDVLGLPDHDTYREHWPLLQAGPDAWKQLVRGDAGFVSEQLARRLNLSLGDAIDIPAPAG EEEEECCCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC DWHITVAGIYADYGNPKGQVTVNVAALTRRFPATPITRMAVRAAPADVPRLIADLGEKFG CCEEEEEEEEECCCCCCCEEEEEHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC LDGRNVVDQANIKQESKQIFNRTFAVTGALNTFTLGVAAIALLTSLLTLANSRLPQLAPL CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH WAIGLTRRRLAEVELLKTLSLAGLTALLALPLGLVVAWCLIAIVNVKAFGWRLPFDVFPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QLIRLLIVTLAAALVASLLPVLRLARMQPAQLVRTFTIER HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA