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The map label for this gene is ugpB [H]

Identifier: 146343592

GI number: 146343592

Start: 7087713

End: 7089059

Strand: Reverse

Name: ugpB [H]

Synonym: BRADO6830

Alternate gene names: 146343592

Gene position: 7089059-7087713 (Counterclockwise)

Preceding gene: 146343602

Following gene: 146343591

Centisome position: 95.07

GC content: 63.99

Gene sequence:

>1347_bases
TTGATTCGGAGTTCGCGTCAGGTGTCGATTTTCTTGCGCATGCTTTGGATTGGAATCCTTTCTGCTGCGGCTGCTTGCGC
CGAGACGGCCCATGCCGCGACCGACATCATGTGGTGGCATGCGATGTCGGGCGAACTCGGCAAGCAGGTCGACCGTCTCG
CGGCGGACTTCAACGCGTCGCAGTCCGATTATCGCATCGTGCCGAGCTACAAGGGCAGCTACACGGAGACCGTGACCGCG
GCCATCTTCGCGTTTCGCTCGCGCGGCCAGCCGGCGATCGTCCAGGTGAACGAGATCGCGACGGCCACCATGACCGCGGC
CAGGGGCGCGATCTATCCGGTGTTCGAATTGATGCGCGACGAGCAGGAAAGCTTTTCGCCATCGGCCTATCTACCGGCCG
TCGCCGGCTACTATGCCGACGCCGACGGCAATCTGCTGTCGTTCCCGTTCAACGCGTCGACGCCGATCCTCTATTACAAC
AAGGATCAATTCCGCGCCGCCGGACTCGATCCCGCGATCGCGCCGCGGACCTGGCCAGAGCTCGGACAGGCCGCCAAACG
TCTGCGCGAGCATGGCGTGGCGTGCGGCTTCACAACGTCGTGGCCGTCCTGGATCCATATCGAGAACTTCGCGGCATTCC
ACAATCTGCCCATCGCCACCAAGGCCAACGGCTTTGGTGGCCTGGACGCCGTGCTGACCTTCAATCATCCTGTTGTGACG
CGTCACATCGCGCAACTCGCCGATTGGCAGAAGGGCAAAGTGTTCGACTATGGCGGCCGGGGTCAGGCAGCCGAGCCACG
CTTCCAGAAGGGGGAGTGCGGCATCTTCATCGGCTCCTCGGCGACGCGCGCCGACATCAAGGCGAACTCGAAGTTCGAGG
TCGGCTTCGGCATGATGCCGTTCTGGCCCGACGTTGCGGGCGCGCCGCAGAATTCGATCATCGGTGGTGCGACGCTGTGG
GTGCTGCGCGACCGTCCTGCCGCGGAATATAAGGGCGTCGCCAAGTTCTTCGCCTATCTGTCAAGGCCGGATGTCCAGGC
GGCCTGGCATCAGAACACGGGCTATTTGCCGATCACCCAGGCTGCGTTCGATCTCACCCGCGCGCAAGGTTTCTACGACC
GCAATCCGGGCACGGCGATCTCGATCGAACAGGTGACACTGCATCCGCCGACCGAGAACTCGCGCGGCCTGCGACTCGGC
TCCTTCGTGCTGATCCGCGACGCGGTCGAGGACGAGATGGAGCAGGCGTTCAGCGGCCGCAAGCCGGCGCACGCAGCGCT
GGATGCCGCCGTCGAACGCGGCAATCGCCTGCTGCGGCAATTCGAGCGCGCAAGCCCGGATCGGTGA

Upstream 100 bases:

>100_bases
CCACGCGTCAATGGTTTGCCGCAAAGTTGTTGCAGCCAAGGGTTGTCGAACTCTAGAGTTCGCCCGATGGCGATTTTCGT
CCACGGCGAGATTTTATTGA

Downstream 100 bases:

>100_bases
TGGCGCGGTTGCCTGATGTCGCCGATGCCGCGCAGTTGCGGCGCCTGCGTGCCGATACGGCATGCTGGCTGCCGGCTGCG
CATGACATTGCTCGGAGCCA

Product: sugar ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MIRSSRQVSIFLRMLWIGILSAAAACAETAHAATDIMWWHAMSGELGKQVDRLAADFNASQSDYRIVPSYKGSYTETVTA
AIFAFRSRGQPAIVQVNEIATATMTAARGAIYPVFELMRDEQESFSPSAYLPAVAGYYADADGNLLSFPFNASTPILYYN
KDQFRAAGLDPAIAPRTWPELGQAAKRLREHGVACGFTTSWPSWIHIENFAAFHNLPIATKANGFGGLDAVLTFNHPVVT
RHIAQLADWQKGKVFDYGGRGQAAEPRFQKGECGIFIGSSATRADIKANSKFEVGFGMMPFWPDVAGAPQNSIIGGATLW
VLRDRPAAEYKGVAKFFAYLSRPDVQAAWHQNTGYLPITQAAFDLTRAQGFYDRNPGTAISIEQVTLHPPTENSRGLRLG
SFVLIRDAVEDEMEQAFSGRKPAHAALDAAVERGNRLLRQFERASPDR

Sequences:

>Translated_448_residues
MIRSSRQVSIFLRMLWIGILSAAAACAETAHAATDIMWWHAMSGELGKQVDRLAADFNASQSDYRIVPSYKGSYTETVTA
AIFAFRSRGQPAIVQVNEIATATMTAARGAIYPVFELMRDEQESFSPSAYLPAVAGYYADADGNLLSFPFNASTPILYYN
KDQFRAAGLDPAIAPRTWPELGQAAKRLREHGVACGFTTSWPSWIHIENFAAFHNLPIATKANGFGGLDAVLTFNHPVVT
RHIAQLADWQKGKVFDYGGRGQAAEPRFQKGECGIFIGSSATRADIKANSKFEVGFGMMPFWPDVAGAPQNSIIGGATLW
VLRDRPAAEYKGVAKFFAYLSRPDVQAAWHQNTGYLPITQAAFDLTRAQGFYDRNPGTAISIEQVTLHPPTENSRGLRLG
SFVLIRDAVEDEMEQAFSGRKPAHAALDAAVERGNRLLRQFERASPDR
>Mature_448_residues
MIRSSRQVSIFLRMLWIGILSAAAACAETAHAATDIMWWHAMSGELGKQVDRLAADFNASQSDYRIVPSYKGSYTETVTA
AIFAFRSRGQPAIVQVNEIATATMTAARGAIYPVFELMRDEQESFSPSAYLPAVAGYYADADGNLLSFPFNASTPILYYN
KDQFRAAGLDPAIAPRTWPELGQAAKRLREHGVACGFTTSWPSWIHIENFAAFHNLPIATKANGFGGLDAVLTFNHPVVT
RHIAQLADWQKGKVFDYGGRGQAAEPRFQKGECGIFIGSSATRADIKANSKFEVGFGMMPFWPDVAGAPQNSIIGGATLW
VLRDRPAAEYKGVAKFFAYLSRPDVQAAWHQNTGYLPITQAAFDLTRAQGFYDRNPGTAISIEQVTLHPPTENSRGLRLG
SFVLIRDAVEDEMEQAFSGRKPAHAALDAAVERGNRLLRQFERASPDR

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=418, Percent_Identity=49.2822966507177, Blast_Score=439, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49181; Mature: 49181

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSSRQVSIFLRMLWIGILSAAAACAETAHAATDIMWWHAMSGELGKQVDRLAADFNAS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCHHHHHHHHHHHHCCCC
QSDYRIVPSYKGSYTETVTAAIFAFRSRGQPAIVQVNEIATATMTAARGAIYPVFELMRD
CCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHH
EQESFSPSAYLPAVAGYYADADGNLLSFPFNASTPILYYNKDQFRAAGLDPAIAPRTWPE
HHHHCCCCCCCHHHHCEEECCCCCEEEECCCCCCCEEEECCCCCEECCCCCCCCCCCCHH
LGQAAKRLREHGVACGFTTSWPSWIHIENFAAFHNLPIATKANGFGGLDAVLTFNHPVVT
HHHHHHHHHHCCCEEEECCCCCCEEEEECHHHHHCCCCEECCCCCCCCEEEEEECCHHHH
RHIAQLADWQKGKVFDYGGRGQAAEPRFQKGECGIFIGSSATRADIKANSKFEVGFGMMP
HHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCC
FWPDVAGAPQNSIIGGATLWVLRDRPAAEYKGVAKFFAYLSRPDVQAAWHQNTGYLPITQ
CCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHH
AAFDLTRAQGFYDRNPGTAISIEQVTLHPPTENSRGLRLGSFVLIRDAVEDEMEQAFSGR
HHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCEEEEHHHHHHHHHHHHCCC
KPAHAALDAAVERGNRLLRQFERASPDR
CCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIRSSRQVSIFLRMLWIGILSAAAACAETAHAATDIMWWHAMSGELGKQVDRLAADFNAS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCHHHHHHHHHHHHCCCC
QSDYRIVPSYKGSYTETVTAAIFAFRSRGQPAIVQVNEIATATMTAARGAIYPVFELMRD
CCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHH
EQESFSPSAYLPAVAGYYADADGNLLSFPFNASTPILYYNKDQFRAAGLDPAIAPRTWPE
HHHHCCCCCCCHHHHCEEECCCCCEEEECCCCCCCEEEECCCCCEECCCCCCCCCCCCHH
LGQAAKRLREHGVACGFTTSWPSWIHIENFAAFHNLPIATKANGFGGLDAVLTFNHPVVT
HHHHHHHHHHCCCEEEECCCCCCEEEEECHHHHHCCCCEECCCCCCCCEEEEEECCHHHH
RHIAQLADWQKGKVFDYGGRGQAAEPRFQKGECGIFIGSSATRADIKANSKFEVGFGMMP
HHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCC
FWPDVAGAPQNSIIGGATLWVLRDRPAAEYKGVAKFFAYLSRPDVQAAWHQNTGYLPITQ
CCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHH
AAFDLTRAQGFYDRNPGTAISIEQVTLHPPTENSRGLRLGSFVLIRDAVEDEMEQAFSGR
HHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCEEEEHHHHHHHHHHHHCCC
KPAHAALDAAVERGNRLLRQFERASPDR
CCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA