| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146343570
Identifier: 146343570
GI number: 146343570
Start: 7065038
End: 7066255
Strand: Reverse
Name: 146343570
Synonym: BRADO6808
Alternate gene names: NA
Gene position: 7066255-7065038 (Counterclockwise)
Preceding gene: 146343571
Following gene: 146343568
Centisome position: 94.77
GC content: 64.53
Gene sequence:
>1218_bases ATGAAGCAACTCAGAGCCTGCGCGCTGGCGCTGACCGCATCGTTCGGCGCGGCGACCGCGCTCGCCGGCGAGATATCCGA CAACGTCGTGCGCGTCGGCGTGCTCAACGACATCTCCGGCATCTTCCAGGACACCAACGGCATGGGCTCGGTCGAGGCCG CGCGGATGGCGGCGGAGGATTTCAACGGCGGGGCTAAGGGCATCAAGGTCGAGATCGTCTATGCCGATCATCAGAACAAG GCCGATGTCGGCTCGGCGATCGCGCGCAAATGGCTCGACGTCGACAAGGTCGACGCCATCGTCGACGTGCCCAACTCGGC GGTGGGCCTGACGATCAACGAGCTCCTGCGCAACAGCCGGATGACGTTCCTGGCCTCGTCGACCGCGAGCTCCGATCTCA CCGGGAAAGCCTGCTCGCCGAACACCATCCAATGGGTCAACGACGCCTGGGCGACCGGCAACACCACGGCGGCCGCGATG CTGGGCCGCGGCGGCAAGGACTGGTATTTCATCACGGTTAACTACGCGCTCGGCCAGGGTATCGAGGCGGAGGCGACCAA CTACATCGAGAAGCATGGCGGCAAGGTGCTGGGCTCGGCCAAGCACCCGCTCGGCACCACGGACTTTGCGTCGTTCCTGC TGCAGGCGCAGGGCTCCAAGGCCAAGGTCATCGGGCTCGCCAATGCCGGTGGCGACACCATCAACGCGGTCAAGCAGGCC GCCGAGTTCGGCATCCAGCAGGGCGGCCAGTCGCTGGTCGCGTTCCTGCTGTTCATCAACGACATCCACGGCATGGGGCT GAAGGCGGCGCAGGGACTGCAGCTCTTGGAAGCCTTCTACTGGGACATGGACGACGACACCCGCGCCTTCGCCAGGCGGT TTGCCGCGCGTCCCGGGATGAACGGGAAGATGCCGAGCGGCAACCAGGCGGGAGTCTACGCCGCAACGCTCGCCTATCTG AACGCGGTTGCCGCCACCGGCAGCGACGATGCCAAGGATGTCGTGCCGCAGATGAAGGCAACGAAGGGCAAAGATAAACT ATTCGGCGACGTCGCCATTCGCGCCGACGGCCGCGTGGTGCATCCGATGTATCTGTTCGAGGTCAAGAAGCCCGAGGAAT CGAAATATGCTTACGACTACTACCGTCTGGTCTCGACGATTCCGGCGGAGCAGGCGTTCCGTCCGATCACCGATGGCGGC TGCCCGTTGGTGAAGTGA
Upstream 100 bases:
>100_bases AGGTGCAGCCGGCGCTCGCCGGGCTGGTGGTCCGGATCCCTGACAAGCAGAGCTAGTTCATCGACACCTATCAAAATAAT AACACAGGGGGAGGACCATC
Downstream 100 bases:
>100_bases CAAAAGGCCCAGCAGCCCCGGCCGCGGCCAACTGTCGCGGTCGGTGTCGTGTGCAGGACTCAGTCCCGCTCGGGCCGTCC GGCATAACCACAATAGCCAT
Product: branched chain amino-acid ABC transporter substrate-binding protein
Products: NA
Alternate protein names: UreA/Short-Chain Amide ABC Transporter; ABC-Type Transporter Periplasmic Component; Branched-Chain Amino Acid ABC Transporter; ABC-Type Transporter Periplasmic; Tat Pathway Signal Sequence Domain-Containing Protein; ABC Transporter; Tat Pathway Signal Sequence Domain Protein; Amino Acid ABC Transporter Periplasmic Protein; Inner-Membrane Translocator; Plasmid Encoded RepA Protein; ABC Transporter Periplasmic Protein; ABC Transporter Subunit
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MKQLRACALALTASFGAATALAGEISDNVVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFNGGAKGIKVEIVYADHQNK ADVGSAIARKWLDVDKVDAIVDVPNSAVGLTINELLRNSRMTFLASSTASSDLTGKACSPNTIQWVNDAWATGNTTAAAM LGRGGKDWYFITVNYALGQGIEAEATNYIEKHGGKVLGSAKHPLGTTDFASFLLQAQGSKAKVIGLANAGGDTINAVKQA AEFGIQQGGQSLVAFLLFINDIHGMGLKAAQGLQLLEAFYWDMDDDTRAFARRFAARPGMNGKMPSGNQAGVYAATLAYL NAVAATGSDDAKDVVPQMKATKGKDKLFGDVAIRADGRVVHPMYLFEVKKPEESKYAYDYYRLVSTIPAEQAFRPITDGG CPLVK
Sequences:
>Translated_405_residues MKQLRACALALTASFGAATALAGEISDNVVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFNGGAKGIKVEIVYADHQNK ADVGSAIARKWLDVDKVDAIVDVPNSAVGLTINELLRNSRMTFLASSTASSDLTGKACSPNTIQWVNDAWATGNTTAAAM LGRGGKDWYFITVNYALGQGIEAEATNYIEKHGGKVLGSAKHPLGTTDFASFLLQAQGSKAKVIGLANAGGDTINAVKQA AEFGIQQGGQSLVAFLLFINDIHGMGLKAAQGLQLLEAFYWDMDDDTRAFARRFAARPGMNGKMPSGNQAGVYAATLAYL NAVAATGSDDAKDVVPQMKATKGKDKLFGDVAIRADGRVVHPMYLFEVKKPEESKYAYDYYRLVSTIPAEQAFRPITDGG CPLVK >Mature_405_residues MKQLRACALALTASFGAATALAGEISDNVVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFNGGAKGIKVEIVYADHQNK ADVGSAIARKWLDVDKVDAIVDVPNSAVGLTINELLRNSRMTFLASSTASSDLTGKACSPNTIQWVNDAWATGNTTAAAM LGRGGKDWYFITVNYALGQGIEAEATNYIEKHGGKVLGSAKHPLGTTDFASFLLQAQGSKAKVIGLANAGGDTINAVKQA AEFGIQQGGQSLVAFLLFINDIHGMGLKAAQGLQLLEAFYWDMDDDTRAFARRFAARPGMNGKMPSGNQAGVYAATLAYL NAVAATGSDDAKDVVPQMKATKGKDKLFGDVAIRADGRVVHPMYLFEVKKPEESKYAYDYYRLVSTIPAEQAFRPITDGG CPLVK
Specific function: Unknown
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42908; Mature: 42908
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQLRACALALTASFGAATALAGEISDNVVRVGVLNDISGIFQDTNGMGSVEAARMAAED CCHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHH FNGGAKGIKVEIVYADHQNKADVGSAIARKWLDVDKVDAIVDVPNSAVGLTINELLRNSR CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHEEECCCCCCCEEHHHHHHCCC MTFLASSTASSDLTGKACSPNTIQWVNDAWATGNTTAAAMLGRGGKDWYFITVNYALGQG EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCC IEAEATNYIEKHGGKVLGSAKHPLGTTDFASFLLQAQGSKAKVIGLANAGGDTINAVKQA CCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH AEFGIQQGGQSLVAFLLFINDIHGMGLKAAQGLQLLEAFYWDMDDDTRAFARRFAARPGM HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC NGKMPSGNQAGVYAATLAYLNAVAATGSDDAKDVVPQMKATKGKDKLFGDVAIRADGRVV CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCEEE HPMYLFEVKKPEESKYAYDYYRLVSTIPAEQAFRPITDGGCPLVK CEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKQLRACALALTASFGAATALAGEISDNVVRVGVLNDISGIFQDTNGMGSVEAARMAAED CCHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHH FNGGAKGIKVEIVYADHQNKADVGSAIARKWLDVDKVDAIVDVPNSAVGLTINELLRNSR CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHEEECCCCCCCEEHHHHHHCCC MTFLASSTASSDLTGKACSPNTIQWVNDAWATGNTTAAAMLGRGGKDWYFITVNYALGQG EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCC IEAEATNYIEKHGGKVLGSAKHPLGTTDFASFLLQAQGSKAKVIGLANAGGDTINAVKQA CCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH AEFGIQQGGQSLVAFLLFINDIHGMGLKAAQGLQLLEAFYWDMDDDTRAFARRFAARPGM HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC NGKMPSGNQAGVYAATLAYLNAVAATGSDDAKDVVPQMKATKGKDKLFGDVAIRADGRVV CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCEEE HPMYLFEVKKPEESKYAYDYYRLVSTIPAEQAFRPITDGGCPLVK CEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA