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The map label for this gene is ydiD [C]

Identifier: 146343519

GI number: 146343519

Start: 7011781

End: 7012371

Strand: Direct

Name: ydiD [C]

Synonym: BRADO6752

Alternate gene names: 146343519

Gene position: 7011781-7012371 (Clockwise)

Preceding gene: 146343512

Following gene: 146343520

Centisome position: 94.03

GC content: 67.85

Gene sequence:

>591_bases
ATGACCTCGGACGTAATCGATTCGACGCGCGAGCGGCGCAATCATCGCCTCCATTGGCACAAGCCCGAGGAGACCGCGCG
CGTGAAGGAGGTCGACGGCTGGCTGCACACCGGCGATCAGGCCCGCATCGACCACGGGCGCATCACCATCACCGGCCGGA
TCAAGGACATCCTGGTCACCTCGACCGGCGAGAAGATTGCACCCGCCGATCTCGAAACGGCGATCCTGACCGACCCTTTG
TTCGAGCAGGCCATCGTGATCGGCGAGAACCGGCCGTTCCTCGCCGCGATCGTCGTGCTCAATCCCAAGGGCTGGGCCGA
GCAGCAGGCGCGCCTCGCCGCCCACGGCCAGCGCGGCAGCGAGGCCGAAGCCGCCTCCCTGCTCCGCCACATCGCCCGCG
CCGTGAAGGCCTATCCGTCCTACGCCACGCCGAAGGCGGTGCATTGGACCCTGGAGCCGTGGACCATCCAGGCCGGCCTG
ATCACGCCCACCCTGAAGAACAAGCGCCCGGCGATCGAACGGACCTTCGCGAAGGAGATCGAAGCGATCTACGCGAAGCG
CCCGGCGGCCTCACCACACGCGACGCCGTAG

Upstream 100 bases:

>100_bases
GGACAACATGCGACGCAAATCCCCCGCATCGTCTCTGCGCGCAGCGGCGTAGGCCTTGCGCGCGGAGACGGCAACTTACA
GTTTGGTCATGCCAAATGAG

Downstream 100 bases:

>100_bases
GGTGGGCAAAGAGGCGCACGTGGCAACGCCGCGGGCGCATCGTGCCCCCCGTTTTCCCGGTCGCAACGGTGGGCACGCGC
CGCCTTGCGGCGTCGCTTTG

Product: putative long-chain-fatty-acid--CoA ligase (fragment)

Products: NA

Alternate protein names: Long-chain acyl-CoA synthetase; LACS [H]

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTSDVIDSTRERRNHRLHWHKPEETARVKEVDGWLHTGDQARIDHGRITITGRIKDILVTSTGEKIAPADLETAILTDPL
FEQAIVIGENRPFLAAIVVLNPKGWAEQQARLAAHGQRGSEAEAASLLRHIARAVKAYPSYATPKAVHWTLEPWTIQAGL
ITPTLKNKRPAIERTFAKEIEAIYAKRPAASPHATP

Sequences:

>Translated_196_residues
MTSDVIDSTRERRNHRLHWHKPEETARVKEVDGWLHTGDQARIDHGRITITGRIKDILVTSTGEKIAPADLETAILTDPL
FEQAIVIGENRPFLAAIVVLNPKGWAEQQARLAAHGQRGSEAEAASLLRHIARAVKAYPSYATPKAVHWTLEPWTIQAGL
ITPTLKNKRPAIERTFAKEIEAIYAKRPAASPHATP
>Mature_195_residues
TSDVIDSTRERRNHRLHWHKPEETARVKEVDGWLHTGDQARIDHGRITITGRIKDILVTSTGEKIAPADLETAILTDPLF
EQAIVIGENRPFLAAIVVLNPKGWAEQQARLAAHGQRGSEAEAASLLRHIARAVKAYPSYATPKAVHWTLEPWTIQAGLI
TPTLKNKRPAIERTFAKEIEAIYAKRPAASPHATP

Specific function: Unknown

COG id: COG1022

COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

Organism=Homo sapiens, GI57165412, Length=172, Percent_Identity=31.3953488372093, Blast_Score=84, Evalue=6e-17,
Organism=Homo sapiens, GI57165410, Length=172, Percent_Identity=31.3953488372093, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI42794760, Length=174, Percent_Identity=32.183908045977, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI42794758, Length=174, Percent_Identity=32.183908045977, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI42794756, Length=174, Percent_Identity=32.183908045977, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40807491, Length=173, Percent_Identity=31.2138728323699, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI27477105, Length=189, Percent_Identity=25.3968253968254, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17541856, Length=182, Percent_Identity=32.967032967033, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17564090, Length=184, Percent_Identity=31.5217391304348, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17510401, Length=182, Percent_Identity=30.2197802197802, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17556552, Length=181, Percent_Identity=30.939226519337, Blast_Score=73, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25147511, Length=156, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193204819, Length=181, Percent_Identity=29.2817679558011, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320852, Length=185, Percent_Identity=27.5675675675676, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.3 [H]

Molecular weight: Translated: 21789; Mature: 21658

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDVIDSTRERRNHRLHWHKPEETARVKEVDGWLHTGDQARIDHGRITITGRIKDILVT
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHCCCCCCEECCCEEEEEEEEEEEEEE
STGEKIAPADLETAILTDPLFEQAIVIGENRPFLAAIVVLNPKGWAEQQARLAAHGQRGS
CCCCEECCCCCHHHHHCCHHHHCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCC
EAEAASLLRHIARAVKAYPSYATPKAVHWTLEPWTIQAGLITPTLKNKRPAIERTFAKEI
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCEECCCCCCCCCHHHHHHHHHH
EAIYAKRPAASPHATP
HHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TSDVIDSTRERRNHRLHWHKPEETARVKEVDGWLHTGDQARIDHGRITITGRIKDILVT
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHCCCCCCEECCCEEEEEEEEEEEEEE
STGEKIAPADLETAILTDPLFEQAIVIGENRPFLAAIVVLNPKGWAEQQARLAAHGQRGS
CCCCEECCCCCHHHHHCCHHHHCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCC
EAEAASLLRHIARAVKAYPSYATPKAVHWTLEPWTIQAGLITPTLKNKRPAIERTFAKEI
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCEECCCCCCCCCHHHHHHHHHH
EAIYAKRPAASPHATP
HHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]