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The map label for this gene is agmR [H]

Identifier: 146343451

GI number: 146343451

Start: 6944393

End: 6945178

Strand: Reverse

Name: agmR [H]

Synonym: BRADO6680

Alternate gene names: 146343451

Gene position: 6945178-6944393 (Counterclockwise)

Preceding gene: 146343453

Following gene: 146343450

Centisome position: 93.14

GC content: 65.27

Gene sequence:

>786_bases
ATGCTTGCATGCGACCAGTCGCCGGGCGAGTATTTCCGAAAGTTCAAGGCAATGAGCGGATTTCGCGCGTTGCCGGCGCG
CAAGATCAAATCAGGATTGAAATCAGGTTTCATGGCGGCCGCCAGCACCCATCTCGTCATTGCCGATGATCATCCGCTGT
TCCGCAACGCACTGCGGCAGGCGGTGGCGAGCGTACTTGCGGAAGCCGTTGTCGACGAGGCCGGGTCGTTCGAGGATCTC
ACCGCGCTCTTGGAAAAGGACTCCGAGGTCGACCTGGTGCTGCTCGACCTCACCATGCCCGGCATCTCCGGCTTCTCCGG
CCTGATCTACCTGCGCGCGCAATATCCGGCGATCCCCGTCGTCATCGTCTCGGCCAGCGACGACGGCGCCACCATCCGCC
GCTCGCTCGATTTCGGCGCCTCCGGCTTCATCCCCAAGCGGTTCGGCGTCGACACGCTGCGCGACGCCATCCAGAAGGTG
ATGGACGGCGAGGTCTGGGTCCCGCCGGACACCGATCTCGCCGCCGGCGTCGATCCGGAGATGACCAAGCTGCGCGACCG
CCTGGTCACGCTGACCCCGCAGCAGGTCCGTGTCCTGATGATGCTGTCGCAGGGGCTGCTCAACAAGCAGATTGCCTACG
AGCTCGGCGTCTCCGAGGCGACCATCAAGGCGCATGTCTCGGCCATCCTGCAGAAGCTCGGCGTCGAGAGCCGGACCCAG
GCGGTGATCGCCGCAGCGAAGATCGCGGGCAGCGCCTGGCGGCAGGACGTGCCGACGGGGAAGTGA

Upstream 100 bases:

>100_bases
GGGACATTGCGGCGGATCAAGTTCGCCGAGCGGTTGTCGCGCTACGGATGGTGCGTTGCACAAGGCGCCAATTAACCGCC
TTCCCCGCCAATGGAATTGC

Downstream 100 bases:

>100_bases
CAGGCTCATCATCTGCTGATTCAAGCCTGTCTTCAGGACAAGACTGTTGATCCTCATGGTGAGGAGGCGCGCAGCGCCGT
CTCGAACCATGAGGCCACAA

Product: two-component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MLACDQSPGEYFRKFKAMSGFRALPARKIKSGLKSGFMAAASTHLVIADDHPLFRNALRQAVASVLAEAVVDEAGSFEDL
TALLEKDSEVDLVLLDLTMPGISGFSGLIYLRAQYPAIPVVIVSASDDGATIRRSLDFGASGFIPKRFGVDTLRDAIQKV
MDGEVWVPPDTDLAAGVDPEMTKLRDRLVTLTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ
AVIAAAKIAGSAWRQDVPTGK

Sequences:

>Translated_261_residues
MLACDQSPGEYFRKFKAMSGFRALPARKIKSGLKSGFMAAASTHLVIADDHPLFRNALRQAVASVLAEAVVDEAGSFEDL
TALLEKDSEVDLVLLDLTMPGISGFSGLIYLRAQYPAIPVVIVSASDDGATIRRSLDFGASGFIPKRFGVDTLRDAIQKV
MDGEVWVPPDTDLAAGVDPEMTKLRDRLVTLTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ
AVIAAAKIAGSAWRQDVPTGK
>Mature_261_residues
MLACDQSPGEYFRKFKAMSGFRALPARKIKSGLKSGFMAAASTHLVIADDHPLFRNALRQAVASVLAEAVVDEAGSFEDL
TALLEKDSEVDLVLLDLTMPGISGFSGLIYLRAQYPAIPVVIVSASDDGATIRRSLDFGASGFIPKRFGVDTLRDAIQKV
MDGEVWVPPDTDLAAGVDPEMTKLRDRLVTLTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ
AVIAAAKIAGSAWRQDVPTGK

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=211, Percent_Identity=35.0710900473934, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=30.4568527918782, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790102, Length=192, Percent_Identity=32.8125, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786747, Length=200, Percent_Identity=26, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788546, Length=208, Percent_Identity=24.5192307692308, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787473, Length=201, Percent_Identity=29.3532338308458, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788222, Length=196, Percent_Identity=22.4489795918367, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789937, Length=200, Percent_Identity=25, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28070; Mature: 28070

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLACDQSPGEYFRKFKAMSGFRALPARKIKSGLKSGFMAAASTHLVIADDHPLFRNALRQ
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
AVASVLAEAVVDEAGSFEDLTALLEKDSEVDLVLLDLTMPGISGFSGLIYLRAQYPAIPV
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEEE
VIVSASDDGATIRRSLDFGASGFIPKRFGVDTLRDAIQKVMDGEVWVPPDTDLAAGVDPE
EEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCHH
MTKLRDRLVTLTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHH
AVIAAAKIAGSAWRQDVPTGK
HHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLACDQSPGEYFRKFKAMSGFRALPARKIKSGLKSGFMAAASTHLVIADDHPLFRNALRQ
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
AVASVLAEAVVDEAGSFEDLTALLEKDSEVDLVLLDLTMPGISGFSGLIYLRAQYPAIPV
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEEE
VIVSASDDGATIRRSLDFGASGFIPKRFGVDTLRDAIQKVMDGEVWVPPDTDLAAGVDPE
EEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCHH
MTKLRDRLVTLTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQ
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHH
AVIAAAKIAGSAWRQDVPTGK
HHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]