Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
---|---|
Accession | NC_009445 |
Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is dhmA2 [H]
Identifier: 146343236
GI number: 146343236
Start: 6708815
End: 6709714
Strand: Direct
Name: dhmA2 [H]
Synonym: BRADO6455
Alternate gene names: 146343236
Gene position: 6708815-6709714 (Clockwise)
Preceding gene: 146343234
Following gene: 146343242
Centisome position: 89.97
GC content: 65.11
Gene sequence:
>900_bases TTGCGTCCGCCCGAGACCTGGAGCGTCCCCATGACCACACAGACCCGACACCGCACCGCGACCGTCCACGGCCGCAAGGT TTTCTACCGCGAGGCCGGCGACCCCGCCGCGCCGACCATCCTCCTGCTGCACGGCCTGCCCACCAGTAGCCAGATGTTCC GCGACCTGATTCCGGCGCTCGCCGATCGTTTCCATCTCGTCGCGCCCGACTACATCGGCTTCGGCCACTCGGATGCGCCC GATCGCCGCGAATTCGCCTACACGTTCGATAATCTCGCTGTCCATGTCGCCGGCCTCGTCGACGTGCTCGGGCTGCAGTC CTACATTCTGTACATGCAGGACTATGGCGGCCCGGTCGGCTTCCGCCTGTTCACAGAACGTCCCGAGCGGGTGAAGGGCT TCATCCTGCAGAACACCAATGCCTACATGGAAGGTGTCGGCGAGGCGCCGAAGAAGGTGCTGCTGCCGTTGTGGGAGAAG CGCACGCCGGAGAGCGAGGCGCCCGCGCGCGAGCTGCTCAGCGTCGACGGTACCAAATTCCAGTGGCTGGTCGGCGCCAG GGATCCCGAAGCGGTCAATCCCGACAATTGGATTTTCGACCAGGCGCTGCTCGACCGTCCGGGCACCCAGGACTATCAGC TCGACCTGCTGGAGAACTACAAGACCAACGTCGCGCTCTATCCGCAATGGCAGGCGGCGTTTCGCACGCACCAGCCGAAG ACGCTGATCGTGTGGGGCCAGCACGACCCGTTCTTCATCCCGCCCGGCGCCCGCGCCTATCTCAACGACCTCTCCGACGT GAAGCTGTTCTGGCTCGACGCCGGCCACTTCGTCCTCGACGAGAACACACCGAAGGTGGCCGCGGAGATCAAGGCGGTGT TCGCGGGCGCCTCGCAATAA
Upstream 100 bases:
>100_bases CCAAGAGACCTTCCATAAAACGAGAGGCTTCTTTCCGAACCTACCGGCTCCCGCTTCTTTTTGGAAGGCATAGAAACCGG GGACCGGCGGCCGGCGATCG
Downstream 100 bases:
>100_bases CGATCATGGTCAATCGGGCCATACCACCACAGCTGTCATCGCTCGGCCTTGACCGAGCGATCCAGTATTCCGAGATGACA GCGGGTCAGCCCGAGAGGCC
Product: alpha/beta superfamily hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MRPPETWSVPMTTQTRHRTATVHGRKVFYREAGDPAAPTILLLHGLPTSSQMFRDLIPALADRFHLVAPDYIGFGHSDAP DRREFAYTFDNLAVHVAGLVDVLGLQSYILYMQDYGGPVGFRLFTERPERVKGFILQNTNAYMEGVGEAPKKVLLPLWEK RTPESEAPARELLSVDGTKFQWLVGARDPEAVNPDNWIFDQALLDRPGTQDYQLDLLENYKTNVALYPQWQAAFRTHQPK TLIVWGQHDPFFIPPGARAYLNDLSDVKLFWLDAGHFVLDENTPKVAAEIKAVFAGASQ
Sequences:
>Translated_299_residues MRPPETWSVPMTTQTRHRTATVHGRKVFYREAGDPAAPTILLLHGLPTSSQMFRDLIPALADRFHLVAPDYIGFGHSDAP DRREFAYTFDNLAVHVAGLVDVLGLQSYILYMQDYGGPVGFRLFTERPERVKGFILQNTNAYMEGVGEAPKKVLLPLWEK RTPESEAPARELLSVDGTKFQWLVGARDPEAVNPDNWIFDQALLDRPGTQDYQLDLLENYKTNVALYPQWQAAFRTHQPK TLIVWGQHDPFFIPPGARAYLNDLSDVKLFWLDAGHFVLDENTPKVAAEIKAVFAGASQ >Mature_299_residues MRPPETWSVPMTTQTRHRTATVHGRKVFYREAGDPAAPTILLLHGLPTSSQMFRDLIPALADRFHLVAPDYIGFGHSDAP DRREFAYTFDNLAVHVAGLVDVLGLQSYILYMQDYGGPVGFRLFTERPERVKGFILQNTNAYMEGVGEAPKKVLLPLWEK RTPESEAPARELLSVDGTKFQWLVGARDPEAVNPDNWIFDQALLDRPGTQDYQLDLLENYKTNVALYPQWQAAFRTHQPK TLIVWGQHDPFFIPPGARAYLNDLSDVKLFWLDAGHFVLDENTPKVAAEIKAVFAGASQ
Specific function: Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the haloalkane dehalogenase family. Type 1 subfamily [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6324392, Length=289, Percent_Identity=39.1003460207612, Blast_Score=208, Evalue=9e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.8.1.5 [H]
Molecular weight: Translated: 33763; Mature: 33763
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPPETWSVPMTTQTRHRTATVHGRKVFYREAGDPAAPTILLLHGLPTSSQMFRDLIPAL CCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHH ADRFHLVAPDYIGFGHSDAPDRREFAYTFDNLAVHVAGLVDVLGLQSYILYMQDYGGPVG HHCEEEECCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE FRLFTERPERVKGFILQNTNAYMEGVGEAPKKVLLPLWEKRTPESEAPARELLSVDGTKF EEEECCCCCHHEEEEEECCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCCEE QWLVGARDPEAVNPDNWIFDQALLDRPGTQDYQLDLLENYKTNVALYPQWQAAFRTHQPK EEEEECCCCCCCCCCCCCHHHHHHCCCCCCCEEEHHHHCCCCCEEEECCHHHHHHCCCCC TLIVWGQHDPFFIPPGARAYLNDLSDVKLFWLDAGHFVLDENTPKVAAEIKAVFAGASQ EEEEECCCCCEEECCCCHHHHCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MRPPETWSVPMTTQTRHRTATVHGRKVFYREAGDPAAPTILLLHGLPTSSQMFRDLIPAL CCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHH ADRFHLVAPDYIGFGHSDAPDRREFAYTFDNLAVHVAGLVDVLGLQSYILYMQDYGGPVG HHCEEEECCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE FRLFTERPERVKGFILQNTNAYMEGVGEAPKKVLLPLWEKRTPESEAPARELLSVDGTKF EEEECCCCCHHEEEEEECCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCCEE QWLVGARDPEAVNPDNWIFDQALLDRPGTQDYQLDLLENYKTNVALYPQWQAAFRTHQPK EEEEECCCCCCCCCCCCCHHHHHHCCCCCCCEEEHHHHCCCCCEEEECCHHHHHHCCCCC TLIVWGQHDPFFIPPGARAYLNDLSDVKLFWLDAGHFVLDENTPKVAAEIKAVFAGASQ EEEEECCCCCEEECCCCHHHHCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]