Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is plcH [H]
Identifier: 146343153
GI number: 146343153
Start: 6605447
End: 6607312
Strand: Direct
Name: plcH [H]
Synonym: BRADO6351
Alternate gene names: 146343153
Gene position: 6605447-6607312 (Clockwise)
Preceding gene: 146343152
Following gene: 146343154
Centisome position: 88.59
GC content: 63.56
Gene sequence:
>1866_bases ATGACCAGAACAGTCATACGGTCCAAGGCGATCGCGCTTGCGACCACTGCCGTCTTCACCGCGACCAGCCTCGCGCCCGC GTTCGCCGGCGCGGCGACCACCACGCCGATCGAGCACGTCATCATCATCGTCGGCGAGAACCACACCTTCGACAACCTGT TCGGCACCTACAAGCCCAAGGCCGACCAGAGCATCGACAACCTGCTCAGCAAGGGCATCGTCAACGAGGACGGCACGCCC GGTCCGCATTTCAAGAAGGCCGAGCAGCGCATCGGCCGTGACGAGGTGCGCTATAGCGCCGAGACCGCATCGAGCGGCGC CTACGCCACGCTGCCACAACCCTACACCACCTACGGCATCGGCCTGCCGCAGAACGTGCTCGACACGCGTTTCCCCGCCA ATCTCCCCAACGGGCCGTATCAGATCTCCAAATACGTGCCCTACGCCGCCTACACCGGCGATCCGGTGCATCGCTTCTTT CAGATGTGGCAGGACATCGACGGCGGCAAGCACGACAAGTTCGTGTGGGTCGAGCAGTCCATCGGCACCGGCTCGAACGG CAAGCCGTACCCCGCCGGCGGCTTCAATCCGATGGAAGGCGCCATTTCGATGGGCTTCTACAACATGAACCCGTTCACCG ATGCGAGCGGCAAGGCCCAGCCCGGCGACGCGCCGTTTTTCAAGAAGCTGGCTGACGACTACGCGATCAGCGACAACTAC CACCAGGCGGTCATGGGCGGCACGGGTGCCAACTTCCAGGCCCTCGTGACCGGCCACGCGGCGTTCTTCACCAATCCCGA GACGCTGAATGGCGCGCCTGCCGTGCCCTACGCCAACCAGATCGAAAACCCCGACCCCGTTCCCGGCACCAACAACTACT ACAAGCAGGACGGCTACAGCGGCGGCTCCTACGTCAACTGCTCGGATCCGAGCGCGCCGGGTGTCTCCGCCATCAACGAG CAGCTGTTCAAGAACGGCGTCCACAACAACAATTGCGCGCCGAACCACTATTATCTGGTCAACAATTACAGCATGTTCTG GAACCAGACCAGCGCCAAGCCGAACGCGCTGGGCTCGGACAAGTTCGTGCTGCCGCCGCAGAGCGCGCCGACGATCGCCG ACGTCATGACCGCCAAGGGCGTGTCCTGGAAATACTACAGCGCCGACCGCGGCGACGACGCCACCACTTTCGCCACCAGC GTCGACGGCGTGCCGCTGCTGTTCCACTCCTATTGCGGCATCTGCGACCCGCTGACCGGTTTCATCAAGGTCATGACGAA CCCGACCGAGGAAGCCAAGCTGCAGAACTACGGCGCCTTCGTGAAGGACGTGCAGAACAACACGCTGCCGGCGGTGTCGT TCGTGCGTCCGTTCGAGGCGCTGGCCGGACATCCCGCCGACTCGACCACGGACCTCTACGAGAAGTTCCTCGAGGCCCTG ATCAACCGCGTCAAGGCCAACCCGCAACTCTGGGCGAAGACGGCGATCTTCATCACCACCGATGAAGGCGGCGGCTATTA CGACTCCGGCTACGTCCAGCCCGTCGACTTCCTCGGCGACGGCACCCGCATTCCCTTCATTCTGGTCTCGCCGCTGGCCA AGAAGGGTCATGTCGACCACACCTATTACGACCACGTCTCGCTCTTGAAGTTCATCGAGCGCAACTGGCGGCTGCCCGCC ATCTCCGCCGTCAGCCGCGACCGGCTGCCGAACCCGATCCATGATCGGGACGACAATCGCTACGTGCCGAAGAACCGGCC GGCGATCGGCGACCTGATGAACCTGTTCGTGTTCGCCGGCGATGACGACGACCACGACGGCGGCTGGCACCATCACCACG ACCACGATCGGGACGACGATCGCTGA
Upstream 100 bases:
>100_bases TGACCGACACCGCATTGCAATTTGTTGCTGCGATGTTTTGACGCAGGCGCCCGCTCAGCAGCGGCACGCGCCAGCCACAC CCACTCCGTCCGGAGATGTC
Downstream 100 bases:
>100_bases TTGATCGCTTCCGTCAGCGTAGCGACGGTACGAGCAGGACAGGCCCGCCGCACTCTGTTGCGGCGGGCCTCTTACTTCGG GACCGGCGGAGCGACGTACC
Product: putative phosphoesterase familiy protein signal peptide
Products: NA
Alternate protein names: Heat-labile hemolysin; PLC-H; Phosphatidylcholine cholinephosphohydrolase [H]
Number of amino acids: Translated: 621; Mature: 620
Protein sequence:
>621_residues MTRTVIRSKAIALATTAVFTATSLAPAFAGAATTTPIEHVIIIVGENHTFDNLFGTYKPKADQSIDNLLSKGIVNEDGTP GPHFKKAEQRIGRDEVRYSAETASSGAYATLPQPYTTYGIGLPQNVLDTRFPANLPNGPYQISKYVPYAAYTGDPVHRFF QMWQDIDGGKHDKFVWVEQSIGTGSNGKPYPAGGFNPMEGAISMGFYNMNPFTDASGKAQPGDAPFFKKLADDYAISDNY HQAVMGGTGANFQALVTGHAAFFTNPETLNGAPAVPYANQIENPDPVPGTNNYYKQDGYSGGSYVNCSDPSAPGVSAINE QLFKNGVHNNNCAPNHYYLVNNYSMFWNQTSAKPNALGSDKFVLPPQSAPTIADVMTAKGVSWKYYSADRGDDATTFATS VDGVPLLFHSYCGICDPLTGFIKVMTNPTEEAKLQNYGAFVKDVQNNTLPAVSFVRPFEALAGHPADSTTDLYEKFLEAL INRVKANPQLWAKTAIFITTDEGGGYYDSGYVQPVDFLGDGTRIPFILVSPLAKKGHVDHTYYDHVSLLKFIERNWRLPA ISAVSRDRLPNPIHDRDDNRYVPKNRPAIGDLMNLFVFAGDDDDHDGGWHHHHDHDRDDDR
Sequences:
>Translated_621_residues MTRTVIRSKAIALATTAVFTATSLAPAFAGAATTTPIEHVIIIVGENHTFDNLFGTYKPKADQSIDNLLSKGIVNEDGTP GPHFKKAEQRIGRDEVRYSAETASSGAYATLPQPYTTYGIGLPQNVLDTRFPANLPNGPYQISKYVPYAAYTGDPVHRFF QMWQDIDGGKHDKFVWVEQSIGTGSNGKPYPAGGFNPMEGAISMGFYNMNPFTDASGKAQPGDAPFFKKLADDYAISDNY HQAVMGGTGANFQALVTGHAAFFTNPETLNGAPAVPYANQIENPDPVPGTNNYYKQDGYSGGSYVNCSDPSAPGVSAINE QLFKNGVHNNNCAPNHYYLVNNYSMFWNQTSAKPNALGSDKFVLPPQSAPTIADVMTAKGVSWKYYSADRGDDATTFATS VDGVPLLFHSYCGICDPLTGFIKVMTNPTEEAKLQNYGAFVKDVQNNTLPAVSFVRPFEALAGHPADSTTDLYEKFLEAL INRVKANPQLWAKTAIFITTDEGGGYYDSGYVQPVDFLGDGTRIPFILVSPLAKKGHVDHTYYDHVSLLKFIERNWRLPA ISAVSRDRLPNPIHDRDDNRYVPKNRPAIGDLMNLFVFAGDDDDHDGGWHHHHDHDRDDDR >Mature_620_residues TRTVIRSKAIALATTAVFTATSLAPAFAGAATTTPIEHVIIIVGENHTFDNLFGTYKPKADQSIDNLLSKGIVNEDGTPG PHFKKAEQRIGRDEVRYSAETASSGAYATLPQPYTTYGIGLPQNVLDTRFPANLPNGPYQISKYVPYAAYTGDPVHRFFQ MWQDIDGGKHDKFVWVEQSIGTGSNGKPYPAGGFNPMEGAISMGFYNMNPFTDASGKAQPGDAPFFKKLADDYAISDNYH QAVMGGTGANFQALVTGHAAFFTNPETLNGAPAVPYANQIENPDPVPGTNNYYKQDGYSGGSYVNCSDPSAPGVSAINEQ LFKNGVHNNNCAPNHYYLVNNYSMFWNQTSAKPNALGSDKFVLPPQSAPTIADVMTAKGVSWKYYSADRGDDATTFATSV DGVPLLFHSYCGICDPLTGFIKVMTNPTEEAKLQNYGAFVKDVQNNTLPAVSFVRPFEALAGHPADSTTDLYEKFLEALI NRVKANPQLWAKTAIFITTDEGGGYYDSGYVQPVDFLGDGTRIPFILVSPLAKKGHVDHTYYDHVSLLKFIERNWRLPAI SAVSRDRLPNPIHDRDDNRYVPKNRPAIGDLMNLFVFAGDDDDHDGGWHHHHDHDRDDDR
Specific function: Hydrolyzes sphingomyelin in addition to phosphatidylcholine [H]
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR008475 - InterPro: IPR017767 - InterPro: IPR006311 [H]
Pfam domain/function: PF05506 DUF756; PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 68032; Mature: 67901
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTVIRSKAIALATTAVFTATSLAPAFAGAATTTPIEHVIIIVGENHTFDNLFGTYKPK CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCC ADQSIDNLLSKGIVNEDGTPGPHFKKAEQRIGRDEVRYSAETASSGAYATLPQPYTTYGI CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHCCHHCCCCCCEEECCCCCCEECC GLPQNVLDTRFPANLPNGPYQISKYVPYAAYTGDPVHRFFQMWQDIDGGKHDKFVWVEQS CCCHHHHHCCCCCCCCCCCEEHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEC IGTGSNGKPYPAGGFNPMEGAISMGFYNMNPFTDASGKAQPGDAPFFKKLADDYAISDNY CCCCCCCCCCCCCCCCCCCHHEEECEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC HQAVMGGTGANFQALVTGHAAFFTNPETLNGAPAVPYANQIENPDPVPGTNNYYKQDGYS HHHEECCCCCCEEEEEECCEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC GGSYVNCSDPSAPGVSAINEQLFKNGVHNNNCAPNHYYLVNNYSMFWNQTSAKPNALGSD CCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCC KFVLPPQSAPTIADVMTAKGVSWKYYSADRGDDATTFATSVDGVPLLFHSYCGICDPLTG CEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHH FIKVMTNPTEEAKLQNYGAFVKDVQNNTLPAVSFVRPFEALAGHPADSTTDLYEKFLEAL HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH INRVKANPQLWAKTAIFITTDEGGGYYDSGYVQPVDFLGDGTRIPFILVSPLAKKGHVDH HHHHCCCCCEEEEEEEEEEECCCCCEECCCCCCCHHHCCCCCCCCEEEECCHHHCCCCCC TYYDHVSLLKFIERNWRLPAISAVSRDRLPNPIHDRDDNRYVPKNRPAIGDLMNLFVFAG HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHEEEEEEC DDDDHDGGWHHHHDHDRDDDR CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TRTVIRSKAIALATTAVFTATSLAPAFAGAATTTPIEHVIIIVGENHTFDNLFGTYKPK CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCC ADQSIDNLLSKGIVNEDGTPGPHFKKAEQRIGRDEVRYSAETASSGAYATLPQPYTTYGI CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHCCHHCCCCCCEEECCCCCCEECC GLPQNVLDTRFPANLPNGPYQISKYVPYAAYTGDPVHRFFQMWQDIDGGKHDKFVWVEQS CCCHHHHHCCCCCCCCCCCEEHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEC IGTGSNGKPYPAGGFNPMEGAISMGFYNMNPFTDASGKAQPGDAPFFKKLADDYAISDNY CCCCCCCCCCCCCCCCCCCHHEEECEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC HQAVMGGTGANFQALVTGHAAFFTNPETLNGAPAVPYANQIENPDPVPGTNNYYKQDGYS HHHEECCCCCCEEEEEECCEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC GGSYVNCSDPSAPGVSAINEQLFKNGVHNNNCAPNHYYLVNNYSMFWNQTSAKPNALGSD CCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCC KFVLPPQSAPTIADVMTAKGVSWKYYSADRGDDATTFATSVDGVPLLFHSYCGICDPLTG CEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHH FIKVMTNPTEEAKLQNYGAFVKDVQNNTLPAVSFVRPFEALAGHPADSTTDLYEKFLEAL HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH INRVKANPQLWAKTAIFITTDEGGGYYDSGYVQPVDFLGDGTRIPFILVSPLAKKGHVDH HHHHCCCCCEEEEEEEEEEECCCCCEECCCCCCCHHHCCCCCCCCEEEECCHHHCCCCCC TYYDHVSLLKFIERNWRLPAISAVSRDRLPNPIHDRDDNRYVPKNRPAIGDLMNLFVFAG HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHEEEEEEC DDDDHDGGWHHHHDHDRDDDR CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3087958; 10984043 [H]