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The map label for this gene is potC [H]

Identifier: 146342997

GI number: 146342997

Start: 6411564

End: 6412343

Strand: Direct

Name: potC [H]

Synonym: BRADO6181

Alternate gene names: 146342997

Gene position: 6411564-6412343 (Clockwise)

Preceding gene: 146342996

Following gene: 146343000

Centisome position: 85.99

GC content: 67.82

Gene sequence:

>780_bases
ATGAGGCCGCTGCCGATCCTCAAAGCGGTGTTCGCCGCGCTCGCCGTGGTGTTTCTGCTCGGCCCGCTGGTGGCCGTGCT
GCCGCTGTCGCTGACCGACAGCGTCTTTCTCAACTATCCCATTCCCGGCTATTCGACGCGCTGGTTCCGCGAGCTCGTCA
CCGCCGACTCCTGGCGCCTCTCCATCGTCAACAGCCTGCTGATCGGCGCGGGCACCACGGCGCTCGCGACGCTGCTCGGC
ACCCTCGCCGCGCTCGGCCTGCGCGGCAAGCGCGCCTCGCTGCTGTTCTCCACGCTTCGCACAATCTTCCTGCTGCCGAT
GGTCGTGCCGGCGGTCGTGCTCGGCGTCGGCATGCAGCTGATGTTCGCGCGCTACGGCCTCACCAACACCTATCTCGGCG
TCATCATCGCCCACACCGTCGTGGCCGTGCCGTTCGTGCTGGTCAACGTCTCCTCGGCGCTGCAGGGCGTCGATATCCGA
TTGGAACAGGCTGCCGCCAGCCTCGGCGCCGGGCCGGCGACCGTGTTGTTCTCGGTCACTCTACCGATCGCCCTGCCCGG
GATCATCTCCGGCGCGCTATTCGCCTTCGCCACCTCGCTCGACGAGGTCGTGCTGACCCTGTTCGTCGCTGGCCCCAACC
AGCGCACTTTGGCGCGGCAGATGTTCGCCACCATCCGCGAGAACATCAGCCCGGCGATCGTCTCGGCGGCGGCCGTGTTC
ATCGTCGGCACCATTGCGCTGTCGCTCGCAATGCTGGCGATCCGGCGGCGCATGGCGTGA

Upstream 100 bases:

>100_bases
CGAACTGGGGCATGGCCGGCGCGCTCGGCCTGGTGCTTTTGGTGATGACCATCCTGCTCTACGCCATCTATATGCGCCTG
ACGGTCGAGGAGCAGCGCGC

Downstream 100 bases:

>100_bases
GCGAGGCTGCGAGGACGTCTGCCGATTGGGTTACTCGTCATGCCCGGGCTTGTCCCGGGCATCCACGTGGTGCTTCGCGA
GCGGTGCGACGTGGATGGCC

Product: spermidine/putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRPLPILKAVFAALAVVFLLGPLVAVLPLSLTDSVFLNYPIPGYSTRWFRELVTADSWRLSIVNSLLIGAGTTALATLLG
TLAALGLRGKRASLLFSTLRTIFLLPMVVPAVVLGVGMQLMFARYGLTNTYLGVIIAHTVVAVPFVLVNVSSALQGVDIR
LEQAAASLGAGPATVLFSVTLPIALPGIISGALFAFATSLDEVVLTLFVAGPNQRTLARQMFATIRENISPAIVSAAAVF
IVGTIALSLAMLAIRRRMA

Sequences:

>Translated_259_residues
MRPLPILKAVFAALAVVFLLGPLVAVLPLSLTDSVFLNYPIPGYSTRWFRELVTADSWRLSIVNSLLIGAGTTALATLLG
TLAALGLRGKRASLLFSTLRTIFLLPMVVPAVVLGVGMQLMFARYGLTNTYLGVIIAHTVVAVPFVLVNVSSALQGVDIR
LEQAAASLGAGPATVLFSVTLPIALPGIISGALFAFATSLDEVVLTLFVAGPNQRTLARQMFATIRENISPAIVSAAAVF
IVGTIALSLAMLAIRRRMA
>Mature_259_residues
MRPLPILKAVFAALAVVFLLGPLVAVLPLSLTDSVFLNYPIPGYSTRWFRELVTADSWRLSIVNSLLIGAGTTALATLLG
TLAALGLRGKRASLLFSTLRTIFLLPMVVPAVVLGVGMQLMFARYGLTNTYLGVIIAHTVVAVPFVLVNVSSALQGVDIR
LEQAAASLGAGPATVLFSVTLPIALPGIISGALFAFATSLDEVVLTLFVAGPNQRTLARQMFATIRENISPAIVSAAAVF
IVGTIALSLAMLAIRRRMA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=221, Percent_Identity=29.4117647058824, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1787081, Length=276, Percent_Identity=34.4202898550725, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1786980, Length=146, Percent_Identity=37.6712328767123, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27256; Mature: 27256

Theoretical pI: Translated: 11.75; Mature: 11.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLPILKAVFAALAVVFLLGPLVAVLPLSLTDSVFLNYPIPGYSTRWFRELVTADSWRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCHHH
SIVNSLLIGAGTTALATLLGTLAALGLRGKRASLLFSTLRTIFLLPMVVPAVVLGVGMQL
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFARYGLTNTYLGVIIAHTVVAVPFVLVNVSSALQGVDIRLEQAAASLGAGPATVLFSVT
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHH
LPIALPGIISGALFAFATSLDEVVLTLFVAGPNQRTLARQMFATIRENISPAIVSAAAVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
IVGTIALSLAMLAIRRRMA
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPLPILKAVFAALAVVFLLGPLVAVLPLSLTDSVFLNYPIPGYSTRWFRELVTADSWRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCHHH
SIVNSLLIGAGTTALATLLGTLAALGLRGKRASLLFSTLRTIFLLPMVVPAVVLGVGMQL
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFARYGLTNTYLGVIIAHTVVAVPFVLVNVSSALQGVDIRLEQAAASLGAGPATVLFSVT
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHH
LPIALPGIISGALFAFATSLDEVVLTLFVAGPNQRTLARQMFATIRENISPAIVSAAAVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
IVGTIALSLAMLAIRRRMA
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]