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The map label for this gene is ybiS [H]

Identifier: 146342930

GI number: 146342930

Start: 6338162

End: 6338965

Strand: Reverse

Name: ybiS [H]

Synonym: BRADO6111

Alternate gene names: 146342930

Gene position: 6338965-6338162 (Counterclockwise)

Preceding gene: 146342932

Following gene: 146342923

Centisome position: 85.01

GC content: 67.41

Gene sequence:

>804_bases
ATGTTCAGATTAGTCCCTACAGCGCTGCTGGCCGGCGCATGCGTCTTCTCTTGCGGTCTGGACCGGGCTGCGGCCCAGGG
ATTTCAGGCGGGATTTCAGCAGCCGACGGTGATCTATAGCGGGCCGCCGCCGCAGAGCGCGCCGGTGCGCACGGCCTATG
TCGAACGCTCGCGGATGGGCGGCGGCTTCATCGAATTCCTGTTCGGCGATCAGCAAGGCGGCCGCGGCGCGCCGCCGCCG
GGGCAGCCGATGTATCAGCAGCAGCCGTCCTATTACGGGCCGCCGCAGGCCGCGCCGGGCGCCGTGCCCCAGCAGGGATA
CCCGGACGAGGAGGCGTATGATCAGACGCAGCGCCCGCTCGACCCGAAATACGAGAAACAGGTCGTTGACTATGACGGCA
AGGAGCGGCCGGGGACCATCGTCATCGATACACCTAACAAGTTCCTCTATCTGGTTCAGGGCGAGGGCAGGGCGCTGCGC
TACGGCATCGGCGTCGGCCGGCCCGGCTTCACCTGGTCGGGCGTGAAGACGATCTCGGCCAAGCGCGAATGGCCGGACTG
GACGCCGCCGGCGGAGATGCTGGCGCGCCGCCCCGATCTGCCGCGCCACATGGAGGGCGGACCGCAGAACCCGCTCGGCG
CCCGCGCGATGTATCTGGGTTCGTCGCTCTATCGGATCCACGGCTCGAACGAGCCCTGGACGATCGGGACCAACGTGTCG
TCGGGCTGCATCCGGATGCGCAACGAGGACGTCATCGACCTCTATACGCGCGTGAATGTCGGCACCCGGGTCATCGTGCT
CTAG

Upstream 100 bases:

>100_bases
TACCAAAGCGAGCGGGTTTTGCTCTTTATTGACGATAAGCGACGGCCTGCTGGCCTCGTGCGACGAACGATCTCCAGACG
AAACAGTACAGAGTACGTCG

Downstream 100 bases:

>100_bases
GTCTCGCTCCGTCATCCCGGCCATCAAGCAAAAGGCCGCCCCCTGGGGCGGCCTTTTCCTTCCGTGGTGTGAGAGGGCCT
CAGGCGTAGTCGCTGCCGCC

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MFRLVPTALLAGACVFSCGLDRAAAQGFQAGFQQPTVIYSGPPPQSAPVRTAYVERSRMGGGFIEFLFGDQQGGRGAPPP
GQPMYQQQPSYYGPPQAAPGAVPQQGYPDEEAYDQTQRPLDPKYEKQVVDYDGKERPGTIVIDTPNKFLYLVQGEGRALR
YGIGVGRPGFTWSGVKTISAKREWPDWTPPAEMLARRPDLPRHMEGGPQNPLGARAMYLGSSLYRIHGSNEPWTIGTNVS
SGCIRMRNEDVIDLYTRVNVGTRVIVL

Sequences:

>Translated_267_residues
MFRLVPTALLAGACVFSCGLDRAAAQGFQAGFQQPTVIYSGPPPQSAPVRTAYVERSRMGGGFIEFLFGDQQGGRGAPPP
GQPMYQQQPSYYGPPQAAPGAVPQQGYPDEEAYDQTQRPLDPKYEKQVVDYDGKERPGTIVIDTPNKFLYLVQGEGRALR
YGIGVGRPGFTWSGVKTISAKREWPDWTPPAEMLARRPDLPRHMEGGPQNPLGARAMYLGSSLYRIHGSNEPWTIGTNVS
SGCIRMRNEDVIDLYTRVNVGTRVIVL
>Mature_267_residues
MFRLVPTALLAGACVFSCGLDRAAAQGFQAGFQQPTVIYSGPPPQSAPVRTAYVERSRMGGGFIEFLFGDQQGGRGAPPP
GQPMYQQQPSYYGPPQAAPGAVPQQGYPDEEAYDQTQRPLDPKYEKQVVDYDGKERPGTIVIDTPNKFLYLVQGEGRALR
YGIGVGRPGFTWSGVKTISAKREWPDWTPPAEMLARRPDLPRHMEGGPQNPLGARAMYLGSSLYRIHGSNEPWTIGTNVS
SGCIRMRNEDVIDLYTRVNVGTRVIVL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=134, Percent_Identity=39.5522388059701, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787356, Length=141, Percent_Identity=35.4609929078014, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788299, Length=137, Percent_Identity=38.6861313868613, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787968, Length=139, Percent_Identity=38.1294964028777, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 29293; Mature: 29293

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRLVPTALLAGACVFSCGLDRAAAQGFQAGFQQPTVIYSGPPPQSAPVRTAYVERSRMG
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCC
GGFIEFLFGDQQGGRGAPPPGQPMYQQQPSYYGPPQAAPGAVPQQGYPDEEAYDQTQRPL
CCEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
DPKYEKQVVDYDGKERPGTIVIDTPNKFLYLVQGEGRALRYGIGVGRPGFTWSGVKTISA
CCCHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEC
KREWPDWTPPAEMLARRPDLPRHMEGGPQNPLGARAMYLGSSLYRIHGSNEPWTIGTNVS
CCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHCCEEEEEECCCCCEEEECCCC
SGCIRMRNEDVIDLYTRVNVGTRVIVL
CCEEEECCCCEEEEEEEECCCEEEEEC
>Mature Secondary Structure
MFRLVPTALLAGACVFSCGLDRAAAQGFQAGFQQPTVIYSGPPPQSAPVRTAYVERSRMG
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCC
GGFIEFLFGDQQGGRGAPPPGQPMYQQQPSYYGPPQAAPGAVPQQGYPDEEAYDQTQRPL
CCEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
DPKYEKQVVDYDGKERPGTIVIDTPNKFLYLVQGEGRALRYGIGVGRPGFTWSGVKTISA
CCCHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEC
KREWPDWTPPAEMLARRPDLPRHMEGGPQNPLGARAMYLGSSLYRIHGSNEPWTIGTNVS
CCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHCCEEEEEECCCCCEEEECCCC
SGCIRMRNEDVIDLYTRVNVGTRVIVL
CCEEEECCCCEEEEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]