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The map label for this gene is rplY [H]

Identifier: 146342827

GI number: 146342827

Start: 6233712

End: 6234287

Strand: Direct

Name: rplY [H]

Synonym: BRADO6006

Alternate gene names: 146342827

Gene position: 6233712-6234287 (Clockwise)

Preceding gene: 146342826

Following gene: 146342828

Centisome position: 83.6

GC content: 68.75

Gene sequence:

>576_bases
GTGGAAGACCGCGAGTTGCGCCAGCGCATCCTCGCCGGCCGGTTTCTGACCACGATCTTCGACGTCACCCTCGACGGCAA
GAAGCACCGGGTGATCCCGCGCGACTTCCATCTCGATCCGGTCAAGGACTTCCCGATCCACGTCGACTTCATGCGGCTCG
GCCAGGGCGCGACCATCCGCGTCAGCGTGCCGCTGCACGTGGTCGGCTCGGAAGGCTCGCCGGGGGTGAAGCGTGGCGGC
ACGGTCAACATCGTGACCCACACGCTCGAGCTCGAGTGCCTCGCGGAGAACATCCCGCAGTTCATCGAGGCCGATGTCAG
CGCGCTGGAAATCAACCACTCGCTGCACGTCTCCGACGTCAAGCTGCCGACCGGCGTGAAGACGCTGTCGCGTGGTGAGG
ACGCGACCCTCGTGACCATCGTGCCGCCGTCGGGCTATGGTGAGGAGCAGAAGGCCGCCGCTGGCGCTGCCGCGGCCCCG
GCCGCTGCCGCCGCTCCGGCCGCCGGTGCCAAGGCTCCCGCTGCCGCTGCGAAGGCCCCTGCTGCCGCGGCCAAGGCCCC
CGAGAAGAAGAAGTAA

Upstream 100 bases:

>100_bases
CCGTCCGTCAGTCGGCAAGGGGGCCGCACGGGCAGAGCGTCGCGCCGGGAGAGTGCCCGGAGTGATTTATGGAGACAACC
AGCCCCCGCTGCCGATCTCG

Downstream 100 bases:

>100_bases
GCCGATCCACTGTCGGAGCGCGCGGGCAGTCCCCGTGCGCTCCGCAGCGACGGCAGGTCCCGGTCCCGCGCCATGCTGCT
GTTCGTCGGTCTCGGCAATC

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MEDRELRQRILAGRFLTTIFDVTLDGKKHRVIPRDFHLDPVKDFPIHVDFMRLGQGATIRVSVPLHVVGSEGSPGVKRGG
TVNIVTHTLELECLAENIPQFIEADVSALEINHSLHVSDVKLPTGVKTLSRGEDATLVTIVPPSGYGEEQKAAAGAAAAP
AAAAAPAAGAKAPAAAAKAPAAAAKAPEKKK

Sequences:

>Translated_191_residues
MEDRELRQRILAGRFLTTIFDVTLDGKKHRVIPRDFHLDPVKDFPIHVDFMRLGQGATIRVSVPLHVVGSEGSPGVKRGG
TVNIVTHTLELECLAENIPQFIEADVSALEINHSLHVSDVKLPTGVKTLSRGEDATLVTIVPPSGYGEEQKAAAGAAAAP
AAAAAPAAGAKAPAAAAKAPAAAAKAPEKKK
>Mature_191_residues
MEDRELRQRILAGRFLTTIFDVTLDGKKHRVIPRDFHLDPVKDFPIHVDFMRLGQGATIRVSVPLHVVGSEGSPGVKRGG
TVNIVTHTLELECLAENIPQFIEADVSALEINHSLHVSDVKLPTGVKTLSRGEDATLVTIVPPSGYGEEQKAAAGAAAAP
AAAAAPAAGAKAPAAAAKAPAAAAKAPEKKK

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- InterPro:   IPR001859
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 19986; Mature: 19986

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDRELRQRILAGRFLTTIFDVTLDGKKHRVIPRDFHLDPVKDFPIHVDFMRLGQGATIR
CCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
VSVPLHVVGSEGSPGVKRGGTVNIVTHTLELECLAENIPQFIEADVSALEINHSLHVSDV
EEEEEEEECCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCEEEECCCEEEEEE
KLPTGVKTLSRGEDATLVTIVPPSGYGEEQKAAAGAAAAPAAAAAPAAGAKAPAAAAKAP
ECCCCCHHHCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHCCCCCCCCCCCHHHCCC
AAAAKAPEKKK
CHHHCCCCCCC
>Mature Secondary Structure
MEDRELRQRILAGRFLTTIFDVTLDGKKHRVIPRDFHLDPVKDFPIHVDFMRLGQGATIR
CCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
VSVPLHVVGSEGSPGVKRGGTVNIVTHTLELECLAENIPQFIEADVSALEINHSLHVSDV
EEEEEEEECCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCEEEECCCEEEEEE
KLPTGVKTLSRGEDATLVTIVPPSGYGEEQKAAAGAAAAPAAAAAPAAGAKAPAAAAKAP
ECCCCCHHHCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHCCCCCCCCCCCHHHCCC
AAAAKAPEKKK
CHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]