Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is uidR [C]
Identifier: 146342810
GI number: 146342810
Start: 6217456
End: 6218064
Strand: Reverse
Name: uidR [C]
Synonym: BRADO5987
Alternate gene names: 146342810
Gene position: 6218064-6217456 (Counterclockwise)
Preceding gene: 146342812
Following gene: 146342805
Centisome position: 83.39
GC content: 67.16
Gene sequence:
>609_bases ATGCCCCGTTCCTCCGATCCGACCCGAAGCCGTATTCTGGCGGCGGCCAACAAACTGTTCTATGCCGACGGCATCCGCGC GGTCAGCGTCGATGCGGTGGCGGAGAAGGCCGGGATCACCAAGAAGACGCTGTACTATCATTTCCGCAGCAAGGACGATC TCGTCGCCGCCTATCTTGATGCGCGCGACCAGCCGAACCTGGAGCTGTTCAAGCGCTGGTTCGACGAGGCGAAGGGCGGC CTGCCGGACAAGATCGCGGCGATCTTCAGCCAGCTCGCCGTGTCCGCACGTCACCCGAAATGGCGCGGCTGCGGTTTCCT GCGCACCACCGCCGAGCTCGCCAATCTGCCTGGCCATCCTGCGATCAAGATCGGCGCGGCGCACAAGAAGAAGTTCGAGG CCTGGTTGCGGCAGACGTTCGAGCAGCAGGGGATCGCAGGCGCAAGCGAGCTTGCGCGGCAGATGCTGCTACTGCTCGAC GGCGCTTTCGCCGTCGTGCTGCTGCACCGGGACGCGAGCTACATGGCGACGGCGGGCGACGCGGCGCGCGCGCTGGTCGC GGCGGCGCTCCCTCGCAAGACACTCAGCCGGCGCAGCCGCGGCCCCTGA
Upstream 100 bases:
>100_bases ATGACGGCGCCTCGCGGGCTGGAAGGACTTGCCAGCCAGACTAGGCGCGGGACTGCCCGAGGTATATTCACTGGGCAGTA TACCCATGTCGAGCGCAGTG
Downstream 100 bases:
>100_bases CCTGCTCGCCGCGGACGACTGTCGCCACCACCTGGCTGGACATGGCTTCGAAATCGGACGGCTTGAGGTAGCCGGCGACG TAGGCCTCCTGGGTGAGGCG
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein; TetR Family Regulatory Protein; Transcriptional Regulatory Protein; Transcriptional Regulator Tetr Family; Transcriptional Regulator Protein; Tetr Family Transcriptional Regulator; TetR-Type Transcriptional Regulator Of Sulfur Metabolism; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR/AcrR-Family; Transcription Regulator Protein; Transcription Regulator TetR; Transcription Regulator; TetR-Family Protein Transcriptional Regulator; Transcriptional Regulator Tetr-Like Protein
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MPRSSDPTRSRILAAANKLFYADGIRAVSVDAVAEKAGITKKTLYYHFRSKDDLVAAYLDARDQPNLELFKRWFDEAKGG LPDKIAAIFSQLAVSARHPKWRGCGFLRTTAELANLPGHPAIKIGAAHKKKFEAWLRQTFEQQGIAGASELARQMLLLLD GAFAVVLLHRDASYMATAGDAARALVAAALPRKTLSRRSRGP
Sequences:
>Translated_202_residues MPRSSDPTRSRILAAANKLFYADGIRAVSVDAVAEKAGITKKTLYYHFRSKDDLVAAYLDARDQPNLELFKRWFDEAKGG LPDKIAAIFSQLAVSARHPKWRGCGFLRTTAELANLPGHPAIKIGAAHKKKFEAWLRQTFEQQGIAGASELARQMLLLLD GAFAVVLLHRDASYMATAGDAARALVAAALPRKTLSRRSRGP >Mature_201_residues PRSSDPTRSRILAAANKLFYADGIRAVSVDAVAEKAGITKKTLYYHFRSKDDLVAAYLDARDQPNLELFKRWFDEAKGGL PDKIAAIFSQLAVSARHPKWRGCGFLRTTAELANLPGHPAIKIGAAHKKKFEAWLRQTFEQQGIAGASELARQMLLLLDG AFAVVLLHRDASYMATAGDAARALVAAALPRKTLSRRSRGP
Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22144; Mature: 22013
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRSSDPTRSRILAAANKLFYADGIRAVSVDAVAEKAGITKKTLYYHFRSKDDLVAAYLD CCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHEEEEECCCCHHHHHHHC ARDQPNLELFKRWFDEAKGGLPDKIAAIFSQLAVSARHPKWRGCGFLRTTAELANLPGHP CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC AIKIGAAHKKKFEAWLRQTFEQQGIAGASELARQMLLLLDGAFAVVLLHRDASYMATAGD EEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHCCCH AARALVAAALPRKTLSRRSRGP HHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PRSSDPTRSRILAAANKLFYADGIRAVSVDAVAEKAGITKKTLYYHFRSKDDLVAAYLD CCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHEEEEECCCCHHHHHHHC ARDQPNLELFKRWFDEAKGGLPDKIAAIFSQLAVSARHPKWRGCGFLRTTAELANLPGHP CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC AIKIGAAHKKKFEAWLRQTFEQQGIAGASELARQMLLLLDGAFAVVLLHRDASYMATAGD EEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHCCCH AARALVAAALPRKTLSRRSRGP HHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA