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The map label for this gene is fliN [H]

Identifier: 146342732

GI number: 146342732

Start: 6121322

End: 6121669

Strand: Direct

Name: fliN [H]

Synonym: BRADO5902

Alternate gene names: 146342732

Gene position: 6121322-6121669 (Clockwise)

Preceding gene: 146342731

Following gene: 146342733

Centisome position: 82.09

GC content: 64.66

Gene sequence:

>348_bases
ATGAGCGACAATGAGATCCCGCTTCCCGACCTCAATTCCGCGGACGCCCCGCCGATTACCGGCGATACCGGCTATACCGA
GGAGGAGCACGCGGCGCGGATTGCCGCAGATCTCGAAGCGGTGTTCGACGTGCCGGTGCAGGTCTCGGCCGTGCTCGGCC
GCTCGAAGATGGATGTCGGCGAGCTTCTGAAGCTCGGGCCCGGCACCGTGCTCGAGCTCGACCGCAAGGTCGGCGAGGCC
ATCGACATCTACGTCAACAACCGTCTCGTCGCCCGCGGCGAGGTGGTGCTGGTCGAGGACAAGCTCGGCGTGACGATGAC
GGAAATCATCAAGTCCGACCGCAACTGA

Upstream 100 bases:

>100_bases
GGAACGCGCTGCCATCGACGCCAAGATCAACGAACTGGTCGGACGCTACATGGCGTCCAAGAAGAACTAGGCGGCTCTGA
TGGCCGAGGGAGTTTAAGTC

Downstream 100 bases:

>100_bases
CAGACATGACCGGCGCGCTGATCGAGAGCGGCGCGATCGTATAGGAGACCACCATGCGGCTTCTCATCGTCGGAACGCTG
AAGGGCCAGCTCACCGCGGC

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSDNEIPLPDLNSADAPPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEA
IDIYVNNRLVARGEVVLVEDKLGVTMTEIIKSDRN

Sequences:

>Translated_115_residues
MSDNEIPLPDLNSADAPPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEA
IDIYVNNRLVARGEVVLVEDKLGVTMTEIIKSDRN
>Mature_114_residues
SDNEIPLPDLNSADAPPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAI
DIYVNNRLVARGEVVLVEDKLGVTMTEIIKSDRN

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=74, Percent_Identity=47.2972972972973, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12372; Mature: 12241

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNEIPLPDLNSADAPPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCHH
ELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKSDRN
HHHHCCCCCEEEEHHHCCCEEEEEECCEEECCCCEEEEECCCCCHHHHHHHCCCC
>Mature Secondary Structure 
SDNEIPLPDLNSADAPPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCHH
ELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKSDRN
HHHHCCCCCEEEEHHHCCCEEEEEECCEEECCCCEEEEECCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8002583; 11259647; 2315326; 1732219 [H]