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The map label for this gene is amiR [H]

Identifier: 146342708

GI number: 146342708

Start: 6094322

End: 6094930

Strand: Reverse

Name: amiR [H]

Synonym: BRADO5875

Alternate gene names: 146342708

Gene position: 6094930-6094322 (Counterclockwise)

Preceding gene: 146342709

Following gene: 146342707

Centisome position: 81.74

GC content: 61.08

Gene sequence:

>609_bases
GTGGCGATCCAAATTCTTCGTGATCTGCGCGGCCTGCGGGTCCATGTCGTACACCCGCCGGACAGCGAGCGGACCAAACT
GGTCGAACATCTGCGGCGCATCGGCTGCATGGTCGAGATGCAGTGGCCGGTGCCGGATTGCTGGGCCGAGGGCGCAGACG
TGGTGCTGCTTGCGATCGAGCATGATGTGCGTTTGGAAATTCAGCGGCTGCTCAAATCGGATGCAAACCATCGGCCGACG
CTGATCGCTGTCGTATCGTACGAGGATCCGTCGACGCTGCAACTCGTGCTCGAGGCCGGAGCCGTCGCCGTGATCGAGCG
GCCGATCCGGCCGTTCGGATTGCTCACGAATCTGACGATCGCGCGCAGCCTTTGGCTGGAGCGGCGCGAAGCCGAGAAGC
GCGTCCGCAAGCTCGAGCGCAAGCTGGCCGGCATCCAGCGCATTCAAAAAGCCAAGGCGATCCTGATGGATGGCCAAGGA
TTGAGCGAGGCTGATGCTTATGAGAGCATCCGTAAGCAGGCGATGTCCAAGCGGTTGTCGATGGACGACATGGCCGCGGC
AATCATTCACGCTAACGAGCTCTTGCAATACCGCGTGAAAGGTGATTAG

Upstream 100 bases:

>100_bases
CGTATTGCGTGGTCCAGAGTCTCGACGACTGGTCGGTCGACGAGCAGCAACTCATTCGGTCCTGAGGTCAGGGGTAGCGT
GGCGGGGCGGAGAACCGGGC

Downstream 100 bases:

>100_bases
CTTTTATTAGTTGAGGGGAGAAATTCCTTCTCAGCGCCGCCGGACCATCAATGATGCTGGTCTGGCACCGGCTAGGTAGC
CCGAAGAACCCGTGAAGGGT

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAIQILRDLRGLRVHVVHPPDSERTKLVEHLRRIGCMVEMQWPVPDCWAEGADVVLLAIEHDVRLEIQRLLKSDANHRPT
LIAVVSYEDPSTLQLVLEAGAVAVIERPIRPFGLLTNLTIARSLWLERREAEKRVRKLERKLAGIQRIQKAKAILMDGQG
LSEADAYESIRKQAMSKRLSMDDMAAAIIHANELLQYRVKGD

Sequences:

>Translated_202_residues
MAIQILRDLRGLRVHVVHPPDSERTKLVEHLRRIGCMVEMQWPVPDCWAEGADVVLLAIEHDVRLEIQRLLKSDANHRPT
LIAVVSYEDPSTLQLVLEAGAVAVIERPIRPFGLLTNLTIARSLWLERREAEKRVRKLERKLAGIQRIQKAKAILMDGQG
LSEADAYESIRKQAMSKRLSMDDMAAAIIHANELLQYRVKGD
>Mature_201_residues
AIQILRDLRGLRVHVVHPPDSERTKLVEHLRRIGCMVEMQWPVPDCWAEGADVVLLAIEHDVRLEIQRLLKSDANHRPTL
IAVVSYEDPSTLQLVLEAGAVAVIERPIRPFGLLTNLTIARSLWLERREAEKRVRKLERKLAGIQRIQKAKAILMDGQGL
SEADAYESIRKQAMSKRLSMDDMAAAIIHANELLQYRVKGD

Specific function: Positive controlling element of AmiE, the gene for aliphatic amidase. Acts as a transcriptional antitermination factor. It is thought to allow RNA polymerase read through a rho- independent transcription terminator between the AmiE promoter and gene [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ANTAR domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR [H]

EC number: NA

Molecular weight: Translated: 22963; Mature: 22832

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50921 ANTAR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQILRDLRGLRVHVVHPPDSERTKLVEHLRRIGCMVEMQWPVPDCWAEGADVVLLAIE
CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHCCCCEEEEEEC
HDVRLEIQRLLKSDANHRPTLIAVVSYEDPSTLQLVLEAGAVAVIERPIRPFGLLTNLTI
CCHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCHHEEHHCCCCHHHHHHHHHH
ARSLWLERREAEKRVRKLERKLAGIQRIQKAKAILMDGQGLSEADAYESIRKQAMSKRLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCC
MDDMAAAIIHANELLQYRVKGD
HHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure 
AIQILRDLRGLRVHVVHPPDSERTKLVEHLRRIGCMVEMQWPVPDCWAEGADVVLLAIE
HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHCCCCEEEEEEC
HDVRLEIQRLLKSDANHRPTLIAVVSYEDPSTLQLVLEAGAVAVIERPIRPFGLLTNLTI
CCHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCHHEEHHCCCCHHHHHHHHHH
ARSLWLERREAEKRVRKLERKLAGIQRIQKAKAILMDGQGLSEADAYESIRKQAMSKRLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCC
MDDMAAAIIHANELLQYRVKGD
HHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2495988; 10984043; 7539417; 10508151 [H]