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The map label for this gene is ydeE [H]

Identifier: 146342600

GI number: 146342600

Start: 5966950

End: 5967789

Strand: Reverse

Name: ydeE [H]

Synonym: BRADO5763

Alternate gene names: 146342600

Gene position: 5967789-5966950 (Counterclockwise)

Preceding gene: 146342601

Following gene: 146342599

Centisome position: 80.03

GC content: 65.83

Gene sequence:

>840_bases
GTGTCCACCAACCCGGCTCAGAAGGCGCTCTGGTACATCGAGAGTCATCTGTCGTCGCCGCTGTCGCTCGATGAGATCGC
TCATGTCGCCGGCGTGTCGCGCTTTCACATCGTGCGTGCCTTCGCAGCCGCGACCGGCCTCTCGGTCATGCGCTATGTCC
GGCTGCGCCGTCTCAGCGAGGCAGCGCGTGAGCTCGCGAATGGTGCGCCCGACATCCTCAGTGTGGCTCTGGCGGCGGAC
TATGGCTCCCACGAAGCCTTCACCCGCGCGTTTCGCGATCAGTTCGGCGTCACGCCGGAGTCGGTCCGCGCCGCCGCGCG
CCTCGATGGCCTCGCACTGCAGGAGCCCATTCTCATGGACCAGACGCTGCTCGATGATTGTCCCGCCCCGCGCTTCGTCA
CGTCGGAGCCGCTGCTCGTCGCCGGCCTCGGCGAGCGCGTCAGCGTCGACAATGGTGCCGGAATTCCGATGTTGTGGCGC
CGCTTCAACGCGATCACGCACGAGGTTCCAGCACGGCGCGGAACAGTCGCCTATGGGGTCTGCTGCAACGGCGACGATGC
CGGTAATTTCGACTACGTCGCCGGCGTCGAGGTGGCCGACTTCTCCGATCTGCCGCGGACTTTCAGCCGCGTTCGCGTGC
CGCCGGCGACATTCGCCGTGTTCACCCATGCCGGCCACATTTCGTCGATTCGCCGCACCGTGCATACGATCTGGAATCGC
TGGCTGCCGCAGTCCGGCTATGCGGTCGCCGATGCGCCGAACTTTGAGCGCTACGATCAGCGGTTCGATCCACTCTCGGG
CCATGGCGGCCTGGAGATCTGGTTGCCGTTGATTCGCTGA

Upstream 100 bases:

>100_bases
CGCAAAGCCGAGCGGCAAGTAGTCCCGCACGCAGTGCAATAACGATCAAGCGGCCGAGGCACCCTGTGCCCATGATGGGT
AGCTTCGTCAGGAGACAGGC

Downstream 100 bases:

>100_bases
CGCCGCGTACACTTGCGTCGAGACGCTGCAAGCGCGTTCCGCAGCAGGGCTGCTCTGCGATGATCCGTGCGGCCGCTTGC
TTGGCAAGCTGCGCGGGCTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSTNPAQKALWYIESHLSSPLSLDEIAHVAGVSRFHIVRAFAAATGLSVMRYVRLRRLSEAARELANGAPDILSVALAAD
YGSHEAFTRAFRDQFGVTPESVRAAARLDGLALQEPILMDQTLLDDCPAPRFVTSEPLLVAGLGERVSVDNGAGIPMLWR
RFNAITHEVPARRGTVAYGVCCNGDDAGNFDYVAGVEVADFSDLPRTFSRVRVPPATFAVFTHAGHISSIRRTVHTIWNR
WLPQSGYAVADAPNFERYDQRFDPLSGHGGLEIWLPLIR

Sequences:

>Translated_279_residues
MSTNPAQKALWYIESHLSSPLSLDEIAHVAGVSRFHIVRAFAAATGLSVMRYVRLRRLSEAARELANGAPDILSVALAAD
YGSHEAFTRAFRDQFGVTPESVRAAARLDGLALQEPILMDQTLLDDCPAPRFVTSEPLLVAGLGERVSVDNGAGIPMLWR
RFNAITHEVPARRGTVAYGVCCNGDDAGNFDYVAGVEVADFSDLPRTFSRVRVPPATFAVFTHAGHISSIRRTVHTIWNR
WLPQSGYAVADAPNFERYDQRFDPLSGHGGLEIWLPLIR
>Mature_278_residues
STNPAQKALWYIESHLSSPLSLDEIAHVAGVSRFHIVRAFAAATGLSVMRYVRLRRLSEAARELANGAPDILSVALAADY
GSHEAFTRAFRDQFGVTPESVRAAARLDGLALQEPILMDQTLLDDCPAPRFVTSEPLLVAGLGERVSVDNGAGIPMLWRR
FNAITHEVPARRGTVAYGVCCNGDDAGNFDYVAGVEVADFSDLPRTFSRVRVPPATFAVFTHAGHISSIRRTVHTIWNRW
LPQSGYAVADAPNFERYDQRFDPLSGHGGLEIWLPLIR

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=261, Percent_Identity=26.8199233716475, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081928, Length=94, Percent_Identity=35.1063829787234, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790497, Length=97, Percent_Identity=35.0515463917526, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30626; Mature: 30495

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNPAQKALWYIESHLSSPLSLDEIAHVAGVSRFHIVRAFAAATGLSVMRYVRLRRLSE
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARELANGAPDILSVALAADYGSHEAFTRAFRDQFGVTPESVRAAARLDGLALQEPILMD
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCHHHH
QTLLDDCPAPRFVTSEPLLVAGLGERVSVDNGAGIPMLWRRFNAITHEVPARRGTVAYGV
HHHHHCCCCCCEECCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
CCNGDDAGNFDYVAGVEVADFSDLPRTFSRVRVPPATFAVFTHAGHISSIRRTVHTIWNR
EECCCCCCCCCEEECCCHHCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHH
WLPQSGYAVADAPNFERYDQRFDPLSGHGGLEIWLPLIR
CCCCCCCEECCCCCHHHHHHHCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
STNPAQKALWYIESHLSSPLSLDEIAHVAGVSRFHIVRAFAAATGLSVMRYVRLRRLSE
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARELANGAPDILSVALAADYGSHEAFTRAFRDQFGVTPESVRAAARLDGLALQEPILMD
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCHHHH
QTLLDDCPAPRFVTSEPLLVAGLGERVSVDNGAGIPMLWRRFNAITHEVPARRGTVAYGV
HHHHHCCCCCCEECCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
CCNGDDAGNFDYVAGVEVADFSDLPRTFSRVRVPPATFAVFTHAGHISSIRRTVHTIWNR
EECCCCCCCCCEEECCCHHCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHH
WLPQSGYAVADAPNFERYDQRFDPLSGHGGLEIWLPLIR
CCCCCCCEECCCCCHHHHHHHCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]