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The map label for this gene is ompR [H]

Identifier: 146342521

GI number: 146342521

Start: 5882304

End: 5883071

Strand: Reverse

Name: ompR [H]

Synonym: BRADO5683

Alternate gene names: 146342521

Gene position: 5883071-5882304 (Counterclockwise)

Preceding gene: 146342525

Following gene: 146342520

Centisome position: 78.9

GC content: 67.97

Gene sequence:

>768_bases
ATGATGTCGTCACACAATACCGCCGTGACCCTCGACGCGAACCTGCCGGCCGCCGCGCGCATCCTCTGTGTCGAGGACGA
TCGCGAGATCGCCGCCTTGCTCACCGAGCTGTTGCAGGAGCACGGCTTCGCGCCGCGCTTCGTGGCCTCGGCCGCGGCGA
TGAACGACGTTCTGCAGCGCGAGCAGGTCGATCTCATCATGCTCGACCTGATGCTGCCGGACGAGGACGGCATGAGCATC
TGCCGCCGCCTGCGCCAGATCTCGGCGGTGCCGATCATCATGGTGACCGCCAAGGGCGAGGACATCGACCGCATCCTCGG
CCTCGAGCTCGGCGCCGACGACTACGTCGTCAAGCCGTTCAATCCGCGCGAGCTGGTGGCGCGCATCCGCGCGCTGCTGC
GCCGCTCGCAGCTGCATCCCGCGGTGATCGCCGCGCGCCAGGCGCCGATGATGTTCGACGGCTGGCGGATCGAGCCGGCG
ACGCGCACGCTGTTCGATCCCGACCGCGTCAAGATCACGCTGACCAGCGCCGAATTCGACATCCTGCTGGCGTTCTGCCG
CAACGCCGGCCGCGTGCTGTCCCGCGAACAGCTGATCGAGCTGGCGCATGGCGGCCAGGCCGGCCCGGTCGAGCGCAGCA
TCGACGTCCACATCAGCCGCATCCGCCAGAAGATCGAGCCCGGCGCCAGGAGCTGGAGCATGATCAAGACCGTGCGCCTC
GGCGGCTACGTCTTCACGCCAAGAGTCGAGACCCTCGATGAAGCCTGA

Upstream 100 bases:

>100_bases
GTGAAGAAATGTTTCCGCCTTAACAATACAACTTGATTTCGCCACGATCGCACGCGGCTTCGGACTGTTCTTTTCGGCCT
AAATCGACCATGTTCCGCGC

Downstream 100 bases:

>100_bases
CAGCAAGACGTGCGGCAACACGTTGCCTCGCCTCGGCCTCACCACGCAGATCGTGACCTTGGCGTCGCTGTCGGTGCTGT
TCGGCATGGTGCTGATGATC

Product: OmpR family two component response transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MMSSHNTAVTLDANLPAAARILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDGMSI
CRRLRQISAVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQLHPAVIAARQAPMMFDGWRIEPA
TRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQLIELAHGGQAGPVERSIDVHISRIRQKIEPGARSWSMIKTVRL
GGYVFTPRVETLDEA

Sequences:

>Translated_255_residues
MMSSHNTAVTLDANLPAAARILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDGMSI
CRRLRQISAVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQLHPAVIAARQAPMMFDGWRIEPA
TRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQLIELAHGGQAGPVERSIDVHISRIRQKIEPGARSWSMIKTVRL
GGYVFTPRVETLDEA
>Mature_255_residues
MMSSHNTAVTLDANLPAAARILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDGMSI
CRRLRQISAVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQLHPAVIAARQAPMMFDGWRIEPA
TRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQLIELAHGGQAGPVERSIDVHISRIRQKIEPGARSWSMIKTVRL
GGYVFTPRVETLDEA

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=50, Blast_Score=203, Evalue=9e-54,
Organism=Escherichia coli, GI1788394, Length=238, Percent_Identity=38.2352941176471, Blast_Score=163, Evalue=9e-42,
Organism=Escherichia coli, GI1790863, Length=232, Percent_Identity=34.4827586206897, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1786599, Length=234, Percent_Identity=36.7521367521368, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=40.3508771929825, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1787229, Length=213, Percent_Identity=40.8450704225352, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=36.5638766519824, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI145693140, Length=240, Percent_Identity=32.0833333333333, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1786784, Length=230, Percent_Identity=38.2608695652174, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786911, Length=209, Percent_Identity=36.3636363636364, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082012, Length=226, Percent_Identity=32.3008849557522, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790552, Length=233, Percent_Identity=32.618025751073, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787375, Length=231, Percent_Identity=34.1991341991342, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789402, Length=231, Percent_Identity=32.9004329004329, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 28445; Mature: 28445

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSSHNTAVTLDANLPAAARILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQR
CCCCCCCEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EQVDLIMLDLMLPDEDGMSICRRLRQISAVPIIMVTAKGEDIDRILGLELGADDYVVKPF
HCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHCEEECCCCEEECCC
NPRELVARIRALLRRSQLHPAVIAARQAPMMFDGWRIEPATRTLFDPDRVKITLTSAEFD
CHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEECCEEECCCCCCCCCCCEEEEEEECCHHH
ILLAFCRNAGRVLSREQLIELAHGGQAGPVERSIDVHISRIRQKIEPGARSWSMIKTVRL
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHEE
GGYVFTPRVETLDEA
CCEEECCCHHHCCCC
>Mature Secondary Structure
MMSSHNTAVTLDANLPAAARILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQR
CCCCCCCEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EQVDLIMLDLMLPDEDGMSICRRLRQISAVPIIMVTAKGEDIDRILGLELGADDYVVKPF
HCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHCEEECCCCEEECCC
NPRELVARIRALLRRSQLHPAVIAARQAPMMFDGWRIEPATRTLFDPDRVKITLTSAEFD
CHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEECCEEECCCCCCCCCCCEEEEEEECCHHH
ILLAFCRNAGRVLSREQLIELAHGGQAGPVERSIDVHISRIRQKIEPGARSWSMIKTVRL
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHEE
GGYVFTPRVETLDEA
CCEEECCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]