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The map label for this gene is 146342508

Identifier: 146342508

GI number: 146342508

Start: 5865124

End: 5866377

Strand: Reverse

Name: 146342508

Synonym: BRADO5670

Alternate gene names: NA

Gene position: 5866377-5865124 (Counterclockwise)

Preceding gene: 146342509

Following gene: 146342506

Centisome position: 78.67

GC content: 66.91

Gene sequence:

>1254_bases
ATGTCATTGATGACACCCGAGGCGATCGAGAGCGTGTTCCGTGACGAGGCCGGCCGCGCGCTCGCGACCTTGATCAGGCT
CGTGGGTGACTTCGATCTGGCCGAGGATGCGTTGCAGGACGCCTTTGCGGCCGCGTTGCTGAGCTGGCGGGGGCGAGAGG
TCCCCGCCAATCCCAGAGCCTGGCTGGTGAATGTCGCCCGCAACAAGGTGATCGATCGCTTTCGGCGGCAACGCAGCTTC
CGCGACAAGGAAGCGGAGATCATCCATGCGATCGAGCGTGACGCCGCGAGCGACGCGTCTGACGTGCCGCCCGATCTCGA
CGACGACATGCTGCGGCTGATCTTCACCTGCTGCCATCCGGCGTTCGCGCCGGAGGTGCAGGTGGCGCTGACGCTGCGTA
CGGTCTGCGGACTGACGACCGCCGAGGTAGCCCGCGCTTTCGTGACCGGCGAAGAAGCCATGGCGCAGCGCCTCGTCCGT
GCCAAGCAGAAGATCCGCCTCGCCGGCATTCCCTATGATGTGCCCGCTCGCGATACTCTCGAGGAACGACTCCGCGGCGT
TCTCACCGTGATCTACCTCGTGTTCACCGAAGGCTATCTCGCGACCTCCGGCCCCGAACTGATCCGCCACGATCTTGCGC
GGGAAGCGATCCGGCTCGGCCGCCTGCTGCTCGGGCTGATCCCGGACGCGCCGGGTATCAAAGGTCTGCTCGCCCTGATG
CTGCTGCACGATGCGCGCCGTGCAGGACGCACCGATGCGTCGGGTGACATCGTGCTGCTCGAGGAGCAGGATCGCTCGAC
ATGGGATCACGCGCAGATCTCGGAAGGGCTGACGCTGGTCGAGCAGGCGCTCCAGGCGAAGGGACGGCCCCAGCCCTATA
CAGTTCAGGCGGCGATCGCCGCGCTGCACGCCCAGGCATCGAGCTACGAGGAAACGGACTGGCGCCAGATCGTCGGCCTC
TACGAGGTGCTGCTGCGGATCGCGCCGTCGCCCGTCATCGAGCTCAATCATGCGGCCGCCGTTTCGATGGTCGACGGTCC
GGCGCGGGCGCTTGCGCTGGTGGATTCGCTCGCCGCGCGCGGCGGCTTGAAGCAATACGACCTGCTGCCGGCCGTACGCG
CGGATCTGCTGCGGCGGCTCGACCGGCGCGAGGAGGCGCGTGTGGCCTATCAGGCGGCGAGCGATGCGACGCAGCTTGCT
CCGCTCAAGCGACTCTATGCGCGCCGGATCGGGCAACTCGATGCCACAATTTGA

Upstream 100 bases:

>100_bases
CGGCATCGCCGCGCGCATTCCTGGCGCCCGCCTCGGCTCGATCGAGGTCAGGCCGGTCTGGCAATACAATCCTTGAGGAC
GACGCTGCGGACCGGCGACG

Downstream 100 bases:

>100_bases
CGCGTCAAGCCCGCGGCACGGTCTCTTCGGCCGGCAGACTGGTCAGCAGCGCATGCAGCGTCCACAAAGTCGAGCGGTCG
GCGATGCCGTCGACCCGCTC

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSLMTPEAIESVFRDEAGRALATLIRLVGDFDLAEDALQDAFAAALLSWRGREVPANPRAWLVNVARNKVIDRFRRQRSF
RDKEAEIIHAIERDAASDASDVPPDLDDDMLRLIFTCCHPAFAPEVQVALTLRTVCGLTTAEVARAFVTGEEAMAQRLVR
AKQKIRLAGIPYDVPARDTLEERLRGVLTVIYLVFTEGYLATSGPELIRHDLAREAIRLGRLLLGLIPDAPGIKGLLALM
LLHDARRAGRTDASGDIVLLEEQDRSTWDHAQISEGLTLVEQALQAKGRPQPYTVQAAIAALHAQASSYEETDWRQIVGL
YEVLLRIAPSPVIELNHAAAVSMVDGPARALALVDSLAARGGLKQYDLLPAVRADLLRRLDRREEARVAYQAASDATQLA
PLKRLYARRIGQLDATI

Sequences:

>Translated_417_residues
MSLMTPEAIESVFRDEAGRALATLIRLVGDFDLAEDALQDAFAAALLSWRGREVPANPRAWLVNVARNKVIDRFRRQRSF
RDKEAEIIHAIERDAASDASDVPPDLDDDMLRLIFTCCHPAFAPEVQVALTLRTVCGLTTAEVARAFVTGEEAMAQRLVR
AKQKIRLAGIPYDVPARDTLEERLRGVLTVIYLVFTEGYLATSGPELIRHDLAREAIRLGRLLLGLIPDAPGIKGLLALM
LLHDARRAGRTDASGDIVLLEEQDRSTWDHAQISEGLTLVEQALQAKGRPQPYTVQAAIAALHAQASSYEETDWRQIVGL
YEVLLRIAPSPVIELNHAAAVSMVDGPARALALVDSLAARGGLKQYDLLPAVRADLLRRLDRREEARVAYQAASDATQLA
PLKRLYARRIGQLDATI
>Mature_416_residues
SLMTPEAIESVFRDEAGRALATLIRLVGDFDLAEDALQDAFAAALLSWRGREVPANPRAWLVNVARNKVIDRFRRQRSFR
DKEAEIIHAIERDAASDASDVPPDLDDDMLRLIFTCCHPAFAPEVQVALTLRTVCGLTTAEVARAFVTGEEAMAQRLVRA
KQKIRLAGIPYDVPARDTLEERLRGVLTVIYLVFTEGYLATSGPELIRHDLAREAIRLGRLLLGLIPDAPGIKGLLALML
LHDARRAGRTDASGDIVLLEEQDRSTWDHAQISEGLTLVEQALQAKGRPQPYTVQAAIAALHAQASSYEETDWRQIVGLY
EVLLRIAPSPVIELNHAAAVSMVDGPARALALVDSLAARGGLKQYDLLPAVRADLLRRLDRREEARVAYQAASDATQLAP
LKRLYARRIGQLDATI

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45949; Mature: 45818

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMTPEAIESVFRDEAGRALATLIRLVGDFDLAEDALQDAFAAALLSWRGREVPANPRA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
WLVNVARNKVIDRFRRQRSFRDKEAEIIHAIERDAASDASDVPPDLDDDMLRLIFTCCHP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
AFAPEVQVALTLRTVCGLTTAEVARAFVTGEEAMAQRLVRAKQKIRLAGIPYDVPARDTL
CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCHHHH
EERLRGVLTVIYLVFTEGYLATSGPELIRHDLAREAIRLGRLLLGLIPDAPGIKGLLALM
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LLHDARRAGRTDASGDIVLLEEQDRSTWDHAQISEGLTLVEQALQAKGRPQPYTVQAAIA
HHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ALHAQASSYEETDWRQIVGLYEVLLRIAPSPVIELNHAAAVSMVDGPARALALVDSLAAR
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCCCHHHHHHHHHHHHHH
GGLKQYDLLPAVRADLLRRLDRREEARVAYQAASDATQLAPLKRLYARRIGQLDATI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLMTPEAIESVFRDEAGRALATLIRLVGDFDLAEDALQDAFAAALLSWRGREVPANPRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
WLVNVARNKVIDRFRRQRSFRDKEAEIIHAIERDAASDASDVPPDLDDDMLRLIFTCCHP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
AFAPEVQVALTLRTVCGLTTAEVARAFVTGEEAMAQRLVRAKQKIRLAGIPYDVPARDTL
CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCHHHH
EERLRGVLTVIYLVFTEGYLATSGPELIRHDLAREAIRLGRLLLGLIPDAPGIKGLLALM
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LLHDARRAGRTDASGDIVLLEEQDRSTWDHAQISEGLTLVEQALQAKGRPQPYTVQAAIA
HHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ALHAQASSYEETDWRQIVGLYEVLLRIAPSPVIELNHAAAVSMVDGPARALALVDSLAAR
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCCCHHHHHHHHHHHHHH
GGLKQYDLLPAVRADLLRRLDRREEARVAYQAASDATQLAPLKRLYARRIGQLDATI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]