| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146342159
Identifier: 146342159
GI number: 146342159
Start: 5523070
End: 5524620
Strand: Direct
Name: 146342159
Synonym: BRADO5309
Alternate gene names: NA
Gene position: 5523070-5524620 (Clockwise)
Preceding gene: 146342158
Following gene: 146342162
Centisome position: 74.07
GC content: 59.9
Gene sequence:
>1551_bases ATGACCTCATCGTCCGATCAGGATCTCGTCTTCGCCTTCCTGGGCGACACCGATCGCCATGCGGACGTCCGCAGGATCGA CACCCACGCAGCTTCGGTTTTCCTGTTCGGCAAACGCGCCTTCAAGATCAAGCGGGCGATCCGGCTGCCGTTTCTCGACT ATTCGACGCTCGCGCTCCGGCACGCCGCCTGCACGAAGGAGTTGGAGATCAACCGCCCGTTCGCACCCGACATCTACCTG CGCGTGGTCCCGATCACCCGTGCGGCGGACGGATCGCTCGATATCGATGGATCCGGTGCCCCTATCGAATATGCCGTCGA GATGCGTCGCTTCGACGATAACAATACGCTCGATCACCTCGCACGCCGAGGCGAGCTGACCGCTAGATTGGCCGACGATC TGGCTGAGACGGTCGCAGCCTCGCATCGAGTCGCAGCAGAAGTCCCGCCTGACTCGTGGATCAGGAGTATCCCGCGTTGG ATCGACGCTTTCCTTGAGAGCTTCGAATCCAACCCGCGGATGGCGCGGATCGAAATCGAGGAGCTCCGCGAACTCTGCCA TGCGGCGCTGTCCCGGCTCACGCCAATTCTGGAGCATCGCGTCGAAAAGGGTTATGTCCGGCGCTGTCATGGTGACCTTC ATCTGGCAAATATCGTGGTGATCGACCAAAGACCGGTGCTGTTCGACGCCATCGAGTTCGATGATAGCATCGCTACGATC GACATTCTCTACGACCTCGCGTTTCCGCTGATGGATATGCTGTACTTCGATCTGCCGGTTGCGGCCAATCATCTCCTGAA TCGTTATCTGTCGATAGCCGCCTCGGACCAGATCGATGGCTTGATACTGTTACCTCTGTTCATGACGATTCGCGCCGCCA TCCGCGCACAGGTCTTCCTGGCAAAGCTCGATCGTGGCGACACCGATCATACCGATCCCGACGGCTCCGCAACGTTCGAG ACTGCCACGCGTTATTTCCAGCTTGCGCGGCAGCTTATTCGGCCATCGGCTCCGATGCTGATTGCCGTCGGCGGGCTCTC AGGAACCGGCAAATCGGCCCTGGCAAGAGCGCTGGCACCTATCCTGAAGCCGCGACCGGGAGCGATCGTTGTCCGCAGCG ACGTGCTGCGCAAACATTTATTTGGCGTCGCCGAAACCGAGCGACTGCCCCAAAAGGCCTATTCGCCCGACGCGAGCTTA CGAGTCTATCATGAACTGACGAAAACAGCAGCTCGTGTGCTGGCGCAGGGTTTCGCGGTCGTGGTCGACGCTGTGTTTGC AAAACACGATGAGCGAGAGGAGATCCGGACACTGGCGACCCGGCAGAACGTGCCCTTCGCCGGCCTCTTTCTCGTTGCCG ACCTCCGCATCCGACAAGAGCGGATAGAGGGACGAGTCAACGACGCTTCCGATGCAACCAGCGCGATTGCGCAGGATCAG GAACGCTATGACATCGGAATGCTGGATTGGCTCCGCGTGGACGCGTCCGGAACGCCAGAATCCACGCTGGACAAAAGCCT GTCAGTGTTGCGGATCGGCAGGTCAGACTGA
Upstream 100 bases:
>100_bases ACCGATGCGAATGATGTTCTGAACCGCTTGAGGCACGGCGACGTTCTCGGGGCCGCCGTTCTCGTTCCGGACTTCGGATT CTGATGCAAGAGCTGCGGCC
Downstream 100 bases:
>100_bases GGCTTCTGGACTCATGGCCAAACCCGTGGCGAACTGTGCCGAAGGACGACCTCACGTGTGCACATACTCGCCTGGCGCGT CCCCAAGCTCATGTCCGTCA
Product: nucleotide-binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 516; Mature: 515
Protein sequence:
>516_residues MTSSSDQDLVFAFLGDTDRHADVRRIDTHAASVFLFGKRAFKIKRAIRLPFLDYSTLALRHAACTKELEINRPFAPDIYL RVVPITRAADGSLDIDGSGAPIEYAVEMRRFDDNNTLDHLARRGELTARLADDLAETVAASHRVAAEVPPDSWIRSIPRW IDAFLESFESNPRMARIEIEELRELCHAALSRLTPILEHRVEKGYVRRCHGDLHLANIVVIDQRPVLFDAIEFDDSIATI DILYDLAFPLMDMLYFDLPVAANHLLNRYLSIAASDQIDGLILLPLFMTIRAAIRAQVFLAKLDRGDTDHTDPDGSATFE TATRYFQLARQLIRPSAPMLIAVGGLSGTGKSALARALAPILKPRPGAIVVRSDVLRKHLFGVAETERLPQKAYSPDASL RVYHELTKTAARVLAQGFAVVVDAVFAKHDEREEIRTLATRQNVPFAGLFLVADLRIRQERIEGRVNDASDATSAIAQDQ ERYDIGMLDWLRVDASGTPESTLDKSLSVLRIGRSD
Sequences:
>Translated_516_residues MTSSSDQDLVFAFLGDTDRHADVRRIDTHAASVFLFGKRAFKIKRAIRLPFLDYSTLALRHAACTKELEINRPFAPDIYL RVVPITRAADGSLDIDGSGAPIEYAVEMRRFDDNNTLDHLARRGELTARLADDLAETVAASHRVAAEVPPDSWIRSIPRW IDAFLESFESNPRMARIEIEELRELCHAALSRLTPILEHRVEKGYVRRCHGDLHLANIVVIDQRPVLFDAIEFDDSIATI DILYDLAFPLMDMLYFDLPVAANHLLNRYLSIAASDQIDGLILLPLFMTIRAAIRAQVFLAKLDRGDTDHTDPDGSATFE TATRYFQLARQLIRPSAPMLIAVGGLSGTGKSALARALAPILKPRPGAIVVRSDVLRKHLFGVAETERLPQKAYSPDASL RVYHELTKTAARVLAQGFAVVVDAVFAKHDEREEIRTLATRQNVPFAGLFLVADLRIRQERIEGRVNDASDATSAIAQDQ ERYDIGMLDWLRVDASGTPESTLDKSLSVLRIGRSD >Mature_515_residues TSSSDQDLVFAFLGDTDRHADVRRIDTHAASVFLFGKRAFKIKRAIRLPFLDYSTLALRHAACTKELEINRPFAPDIYLR VVPITRAADGSLDIDGSGAPIEYAVEMRRFDDNNTLDHLARRGELTARLADDLAETVAASHRVAAEVPPDSWIRSIPRWI DAFLESFESNPRMARIEIEELRELCHAALSRLTPILEHRVEKGYVRRCHGDLHLANIVVIDQRPVLFDAIEFDDSIATID ILYDLAFPLMDMLYFDLPVAANHLLNRYLSIAASDQIDGLILLPLFMTIRAAIRAQVFLAKLDRGDTDHTDPDGSATFET ATRYFQLARQLIRPSAPMLIAVGGLSGTGKSALARALAPILKPRPGAIVVRSDVLRKHLFGVAETERLPQKAYSPDASLR VYHELTKTAARVLAQGFAVVVDAVFAKHDEREEIRTLATRQNVPFAGLFLVADLRIRQERIEGRVNDASDATSAIAQDQE RYDIGMLDWLRVDASGTPESTLDKSLSVLRIGRSD
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 57554; Mature: 57423
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSSDQDLVFAFLGDTDRHADVRRIDTHAASVFLFGKRAFKIKRAIRLPFLDYSTLALR CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEEEECHHHHHHHHHHHCCCCCHHHHHHH HAACTKELEINRPFAPDIYLRVVPITRAADGSLDIDGSGAPIEYAVEMRRFDDNNTLDHL HHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHCCCCCHHHHH ARRGELTARLADDLAETVAASHRVAAEVPPDSWIRSIPRWIDAFLESFESNPRMARIEIE HHHCCHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH ELRELCHAALSRLTPILEHRVEKGYVRRCHGDLHLANIVVIDQRPVLFDAIEFDDSIATI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEECCCCHHHH DILYDLAFPLMDMLYFDLPVAANHLLNRYLSIAASDQIDGLILLPLFMTIRAAIRAQVFL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH AKLDRGDTDHTDPDGSATFETATRYFQLARQLIRPSAPMLIAVGGLSGTGKSALARALAP HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH ILKPRPGAIVVRSDVLRKHLFGVAETERLPQKAYSPDASLRVYHELTKTAARVLAQGFAV HHCCCCCEEEEHHHHHHHHHHCHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH VVDAVFAKHDEREEIRTLATRQNVPFAGLFLVADLRIRQERIEGRVNDASDATSAIAQDQ HHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCH ERYDIGMLDWLRVDASGTPESTLDKSLSVLRIGRSD HHCCCCCCCEEEECCCCCCHHHHHHCHHEEECCCCC >Mature Secondary Structure TSSSDQDLVFAFLGDTDRHADVRRIDTHAASVFLFGKRAFKIKRAIRLPFLDYSTLALR CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEEEECHHHHHHHHHHHCCCCCHHHHHHH HAACTKELEINRPFAPDIYLRVVPITRAADGSLDIDGSGAPIEYAVEMRRFDDNNTLDHL HHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHCCCCCHHHHH ARRGELTARLADDLAETVAASHRVAAEVPPDSWIRSIPRWIDAFLESFESNPRMARIEIE HHHCCHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH ELRELCHAALSRLTPILEHRVEKGYVRRCHGDLHLANIVVIDQRPVLFDAIEFDDSIATI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEECCCCHHHH DILYDLAFPLMDMLYFDLPVAANHLLNRYLSIAASDQIDGLILLPLFMTIRAAIRAQVFL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH AKLDRGDTDHTDPDGSATFETATRYFQLARQLIRPSAPMLIAVGGLSGTGKSALARALAP HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH ILKPRPGAIVVRSDVLRKHLFGVAETERLPQKAYSPDASLRVYHELTKTAARVLAQGFAV HHCCCCCEEEEHHHHHHHHHHCHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH VVDAVFAKHDEREEIRTLATRQNVPFAGLFLVADLRIRQERIEGRVNDASDATSAIAQDQ HHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCH ERYDIGMLDWLRVDASGTPESTLDKSLSVLRIGRSD HHCCCCCCCEEEECCCCCCHHHHHHCHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]