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The map label for this gene is ykcC [H]

Identifier: 146342056

GI number: 146342056

Start: 5407171

End: 5407887

Strand: Reverse

Name: ykcC [H]

Synonym: BRADO5196

Alternate gene names: 146342056

Gene position: 5407887-5407171 (Counterclockwise)

Preceding gene: 146342059

Following gene: 146342055

Centisome position: 72.52

GC content: 56.9

Gene sequence:

>717_bases
ATGGACCATGTCAGCGCCGACGTCGACGCCGTTGCAACACTGGCGGCTGATCTACAAGATCCGCCCGAAGTTGTTCTGCG
GTTTTTCGCCGAATGGCGCAAAGGTGCGTCTATCGTGTGGGGGCGCCGTCGCACAAGACAGGATCACGGCTGGCGCCGCT
TGGTGTCGACGCTGTTTGAGAACCTGATCCGTCGCTATGCCATGCCGCGCGGCTCGAAGTTTACGACCGGAAGCTTCTTC
CTGGCCGACCGTCGGGTCGTCGATTGTTTCAGGGAAATGCGCGAGTCGGCGCGCGTCACTTTCGCCCTCATTGCATGGAC
CGGCTTTGACCAAGCGGTGGTGGAATACGACCGATTGTCGCGAACGGCAGGCAAGTCCGGGTGGACGTTCGGTCGCATGA
TCCACGCATTCTATGACGTGGTTATGAGCTTTTCTCAGATGCCTGCACGCCTGTTGACGTTCATTGGACTTGCAACCTCG
GCCCTGAGTGGTGCGGCGCTAATTTATCTTGTTGGAATTTGGCTTCTCTCCGAGGTGCAACCGGGCTGGACCGGAATCAT
GGCGACCATGACTCTCTTCTTCGGCATCTTGTTCCTTATGCTGGGCGTCATTTCCGAGTACCTCTATCGCATCCTGTTAG
AAACAAAGAATCGGCCGCTATATTTCGTAGCCCAATCAGTCGGCTCCCGAAGCGAGGCTCGTGAACTTGAACACTGA

Upstream 100 bases:

>100_bases
CAGCTGGACGAAAATCGAGCAGATTTGCAAGAAAAATGCTGCGTTTTCAGCTCTACGGCTCTCCCGCAATTTTGGAGCGC
ATCTGGCTCTGACGGCGGGT

Downstream 100 bases:

>100_bases
CGAACTTGTCTGGACGGAGTTGGAGCGTTATGCGCTGCCTCCATCGCTGAGTTGGATTGCGGATCGGGGGTTCAATTGGC
CCGAAGCGATCCACAAGTCG

Product: putative glycosyl transferase

Products: GDP; dolichyl D-mannosyl phosphate

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDHVSADVDAVATLAADLQDPPEVVLRFFAEWRKGASIVWGRRRTRQDHGWRRLVSTLFENLIRRYAMPRGSKFTTGSFF
LADRRVVDCFREMRESARVTFALIAWTGFDQAVVEYDRLSRTAGKSGWTFGRMIHAFYDVVMSFSQMPARLLTFIGLATS
ALSGAALIYLVGIWLLSEVQPGWTGIMATMTLFFGILFLMLGVISEYLYRILLETKNRPLYFVAQSVGSRSEARELEH

Sequences:

>Translated_238_residues
MDHVSADVDAVATLAADLQDPPEVVLRFFAEWRKGASIVWGRRRTRQDHGWRRLVSTLFENLIRRYAMPRGSKFTTGSFF
LADRRVVDCFREMRESARVTFALIAWTGFDQAVVEYDRLSRTAGKSGWTFGRMIHAFYDVVMSFSQMPARLLTFIGLATS
ALSGAALIYLVGIWLLSEVQPGWTGIMATMTLFFGILFLMLGVISEYLYRILLETKNRPLYFVAQSVGSRSEARELEH
>Mature_238_residues
MDHVSADVDAVATLAADLQDPPEVVLRFFAEWRKGASIVWGRRRTRQDHGWRRLVSTLFENLIRRYAMPRGSKFTTGSFF
LADRRVVDCFREMRESARVTFALIAWTGFDQAVVEYDRLSRTAGKSGWTFGRMIHAFYDVVMSFSQMPARLLTFIGLATS
ALSGAALIYLVGIWLLSEVQPGWTGIMATMTLFFGILFLMLGVISEYLYRILLETKNRPLYFVAQSVGSRSEARELEH

Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. GtrB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788692, Length=232, Percent_Identity=28.8793103448276, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788588, Length=241, Percent_Identity=31.1203319502075, Blast_Score=101, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.83

Molecular weight: Translated: 27127; Mature: 27127

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHVSADVDAVATLAADLQDPPEVVLRFFAEWRKGASIVWGRRRTRQDHGWRRLVSTLFE
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHCHHHCCHHHHHHHHHHHHHH
NLIRRYAMPRGSKFTTGSFFLADRRVVDCFREMRESARVTFALIAWTGFDQAVVEYDRLS
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHH
RTAGKSGWTFGRMIHAFYDVVMSFSQMPARLLTFIGLATSALSGAALIYLVGIWLLSEVQ
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PGWTGIMATMTLFFGILFLMLGVISEYLYRILLETKNRPLYFVAQSVGSRSEARELEH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCHHHHHHCCC
>Mature Secondary Structure
MDHVSADVDAVATLAADLQDPPEVVLRFFAEWRKGASIVWGRRRTRQDHGWRRLVSTLFE
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHCHHHCCHHHHHHHHHHHHHH
NLIRRYAMPRGSKFTTGSFFLADRRVVDCFREMRESARVTFALIAWTGFDQAVVEYDRLS
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHH
RTAGKSGWTFGRMIHAFYDVVMSFSQMPARLLTFIGLATSALSGAALIYLVGIWLLSEVQ
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PGWTGIMATMTLFFGILFLMLGVISEYLYRILLETKNRPLYFVAQSVGSRSEARELEH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GDPmannose; dolichyl phosphate

Specific reaction: GDP-mannose + dolichyl phosphate = GDP + dolichyl D-mannosyl phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]