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The map label for this gene is ydgJ [H]

Identifier: 146342049

GI number: 146342049

Start: 5399285

End: 5400304

Strand: Direct

Name: ydgJ [H]

Synonym: BRADO5189

Alternate gene names: 146342049

Gene position: 5399285-5400304 (Clockwise)

Preceding gene: 146342048

Following gene: 146342050

Centisome position: 72.41

GC content: 56.76

Gene sequence:

>1020_bases
ATGCGCGTTGCTGTCGTTGGGTACGGGTATTGGGGTCCCAATCTCGTCCGAAACTTCTCCGCCCACCCCGACTTTGAAGT
CGCCGCGATCGTCGACGCAAACGAATCCGTTCGGCAACGCGCCTCCACTGAACAGCGCGGCATCCGCGTCGTCGCTGATT
TCGAGGAGATCGCTCGAGATGCTAGTATCGAGGTCGTGGCTATTGCTACGCCGGTCGCGACACATTTTTCGCTGGCCAGT
CGCGCACTGCTAGCCGGCAAACATGTCATCGTTGAAAAGCCGATGTGCGCTTCGGTCGCCGAATGCCAGGAACTTACCGC
GATTGCACACCGGGCCAATCGCGTTCTGATGGTCGATCACACGTTCCTGTTCACCGGCGCAGTGCAGATGATCAAGCAGC
TGGCGCAACGCCGAGAGCTCGGCGACATCTGCTATTTCGATTCGATGCGAGTCAATCTGGGTTTGTTCCAGCAGGACGTG
AACTGCCTCTGGGATCTTGCCCCCCACGATCTATCCATCATCGACTATCTGCTGGAGGACGAAGTCGTCGGCATCGACGC
TTCAAGCTATTGCCATCTCAATCCGGGCTTTCCGGACATGGTTTATGTAACGCTTCACTTCGCTCGAAACACGGTCGCCC
ACTTGAACCTCAGCTGGATGTCTCCGGTGAAAGTTCGCCGCATTGCGGTGGGAGGTACGAAGCAGATGCTGGTGTGGGAT
GATCTTGACCAGGATCAGAAGATCCGCGTCTACAATTCGGGAATCGAGTACCTCCCCGCCGACCAACGTAACAGCATGAT
CCCCCAGTACCGCATTGGAGACATCTACTCGCCCAGGCTTCCTAAGACCGAGGCACTTGCAGGTGTCGTAGACCATTTTT
CCAGGGTCATTCGTGGAGATGAGAATTCGATACTGTCTCCTGAACGAGGGACGAAGATCGTACGTATTCTGGAGATGACA
CAGAAGATCCTGGACGGTGCGCCAACCGCGGGACGGCAAGTCCGGGAGCCGCGATCGTGA

Upstream 100 bases:

>100_bases
TGACATCAGCTCTTGGGGTTATTCATGATTGGCTACGCCCATTCCATCAGGCTCCACTCGATTTGCGTTCATTGACTCTG
ACGGACAGGAACTAACGAAG

Downstream 100 bases:

>100_bases
GCCGGCGGATTCTCGTGACCGGTGGCGCCGGTTTCATTGGCAGCCATCTCGTTGAACATCTATTGTCATCCGGCTACGTA
GTGACCGTGCTCGACGATCT

Product: NAD(P)-dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MRVAVVGYGYWGPNLVRNFSAHPDFEVAAIVDANESVRQRASTEQRGIRVVADFEEIARDASIEVVAIATPVATHFSLAS
RALLAGKHVIVEKPMCASVAECQELTAIAHRANRVLMVDHTFLFTGAVQMIKQLAQRRELGDICYFDSMRVNLGLFQQDV
NCLWDLAPHDLSIIDYLLEDEVVGIDASSYCHLNPGFPDMVYVTLHFARNTVAHLNLSWMSPVKVRRIAVGGTKQMLVWD
DLDQDQKIRVYNSGIEYLPADQRNSMIPQYRIGDIYSPRLPKTEALAGVVDHFSRVIRGDENSILSPERGTKIVRILEMT
QKILDGAPTAGRQVREPRS

Sequences:

>Translated_339_residues
MRVAVVGYGYWGPNLVRNFSAHPDFEVAAIVDANESVRQRASTEQRGIRVVADFEEIARDASIEVVAIATPVATHFSLAS
RALLAGKHVIVEKPMCASVAECQELTAIAHRANRVLMVDHTFLFTGAVQMIKQLAQRRELGDICYFDSMRVNLGLFQQDV
NCLWDLAPHDLSIIDYLLEDEVVGIDASSYCHLNPGFPDMVYVTLHFARNTVAHLNLSWMSPVKVRRIAVGGTKQMLVWD
DLDQDQKIRVYNSGIEYLPADQRNSMIPQYRIGDIYSPRLPKTEALAGVVDHFSRVIRGDENSILSPERGTKIVRILEMT
QKILDGAPTAGRQVREPRS
>Mature_339_residues
MRVAVVGYGYWGPNLVRNFSAHPDFEVAAIVDANESVRQRASTEQRGIRVVADFEEIARDASIEVVAIATPVATHFSLAS
RALLAGKHVIVEKPMCASVAECQELTAIAHRANRVLMVDHTFLFTGAVQMIKQLAQRRELGDICYFDSMRVNLGLFQQDV
NCLWDLAPHDLSIIDYLLEDEVVGIDASSYCHLNPGFPDMVYVTLHFARNTVAHLNLSWMSPVKVRRIAVGGTKQMLVWD
DLDQDQKIRVYNSGIEYLPADQRNSMIPQYRIGDIYSPRLPKTEALAGVVDHFSRVIRGDENSILSPERGTKIVRILEMT
QKILDGAPTAGRQVREPRS

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=184, Percent_Identity=31.5217391304348, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082405, Length=268, Percent_Identity=23.134328358209, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37958; Mature: 37958

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAVVGYGYWGPNLVRNFSAHPDFEVAAIVDANESVRQRASTEQRGIRVVADFEEIARD
CEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEEECHHHHCCC
ASIEVVAIATPVATHFSLASRALLAGKHVIVEKPMCASVAECQELTAIAHRANRVLMVDH
CCEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEC
TFLFTGAVQMIKQLAQRRELGDICYFDSMRVNLGLFQQDVNCLWDLAPHDLSIIDYLLED
HHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHCC
EVVGIDASSYCHLNPGFPDMVYVTLHFARNTVAHLNLSWMSPVKVRRIAVGGTKQMLVWD
CEEECCCCCEEEECCCCCCEEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCEEEEEC
DLDQDQKIRVYNSGIEYLPADQRNSMIPQYRIGDIYSPRLPKTEALAGVVDHFSRVIRGD
CCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
ENSILSPERGTKIVRILEMTQKILDGAPTAGRQVREPRS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRVAVVGYGYWGPNLVRNFSAHPDFEVAAIVDANESVRQRASTEQRGIRVVADFEEIARD
CEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEEECHHHHCCC
ASIEVVAIATPVATHFSLASRALLAGKHVIVEKPMCASVAECQELTAIAHRANRVLMVDH
CCEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEC
TFLFTGAVQMIKQLAQRRELGDICYFDSMRVNLGLFQQDVNCLWDLAPHDLSIIDYLLED
HHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHCC
EVVGIDASSYCHLNPGFPDMVYVTLHFARNTVAHLNLSWMSPVKVRRIAVGGTKQMLVWD
CEEECCCCCEEEECCCCCCEEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCEEEEEC
DLDQDQKIRVYNSGIEYLPADQRNSMIPQYRIGDIYSPRLPKTEALAGVVDHFSRVIRGD
CCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
ENSILSPERGTKIVRILEMTQKILDGAPTAGRQVREPRS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]